JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
ESRP1_chr8_94636174_94712466	0/1	t0001	1723	251	78	55	87	8	22	copy fasta	ESRP1	chr8	94636174	94712466
ESRP1_chr8_94636174_94712466	1/0	t0002	1723	97	1	13	61	2	19	copy fasta	ESRP1	chr8	94636174	94712466
ESRP1_chr8_94636174_94712466	0/0	t0003	1723	6	6	0	0	0	0	copy fasta	ESRP1	chr8	94636174	94712466
ESRP1_chr8_94636174_94712466	0/0	t0004	1723	5	5	0	0	0	0	copy fasta	ESRP1	chr8	94636174	94712466
ESRP1_chr8_94636174_94712466	0/0	t0005	1723	4	0	0	4	0	0	copy fasta	ESRP1	chr8	94636174	94712466
ESRP1_chr8_94636174_94712466	0/0	t0006	1723	3	3	0	0	0	0	copy fasta	ESRP1	chr8	94636174	94712466
ESRP1_chr8_94636174_94712466	0/0	t0007	1723	1	0	0	0	0	1	copy fasta	ESRP1	chr8	94636174	94712466
ESRP1_chr8_94636174_94712466	0/0	t0008	1723	1	0	0	1	0	0	copy fasta	ESRP1	chr8	94636174	94712466
ESRP1_chr8_94636174_94712466	0/0	t0009	1723	1	0	0	1	0	0	copy fasta	ESRP1	chr8	94636174	94712466
ESRP1_chr8_94636174_94712466	0/0	t0010	1723	1	1	0	0	0	0	copy fasta	ESRP1	chr8	94636174	94712466
ESRP1_chr8_94636174_94712466	0/0	t0011	1723	1	1	0	0	0	0	copy fasta	ESRP1	chr8	94636174	94712466
ESRP1_chr8_94636174_94712466	0/0	t0012	1723	1	1	0	0	0	0	copy fasta	ESRP1	chr8	94636174	94712466
ESRP1_chr8_94636174_94712466	0/0	t0013	1723	1	0	0	1	0	0	copy fasta	ESRP1	chr8	94636174	94712466
ESRP1_chr8_94636174_94712466	0/0	t0014	1723	1	0	0	1	0	0	copy fasta	ESRP1	chr8	94636174	94712466
ESRP2_chr16_68224033_68241127	1/1	t0001	1276	191	53	42	64	7	23	copy fasta	ESRP2	chr16	68224033	68241127
ESRP2_chr16_68224033_68241127	0/0	t0002	1276	75	29	13	23	1	9	copy fasta	ESRP2	chr16	68224033	68241127
ESRP2_chr16_68224033_68241127	0/0	t0003	1276	4	4	0	0	0	0	copy fasta	ESRP2	chr16	68224033	68241127
ESRP2_chr16_68224033_68241127	0/0	t0004	1276	2	0	0	2	0	0	copy fasta	ESRP2	chr16	68224033	68241127
ESRP2_chr16_68224033_68241127	0/0	t0005	1276	1	0	1	0	0	0	copy fasta	ESRP2	chr16	68224033	68241127
ESRP2_chr16_68224033_68241127	0/0	t0006	1276	1	0	0	1	0	0	copy fasta	ESRP2	chr16	68224033	68241127
ESRRA_chr11_64300524_64321743	1/1	t0001	1003	326	76	69	132	11	36	copy fasta	ESRRA	chr11	64300524	64321743
ESRRA_chr11_64300524_64321743	0/0	t0002	1003	46	20	0	20	0	6	copy fasta	ESRRA	chr11	64300524	64321743
ESRRA_chr11_64300524_64321743	0/0	t0003	1003	7	0	0	7	0	0	copy fasta	ESRRA	chr11	64300524	64321743
ESRRA_chr11_64300524_64321743	0/0	t0004	1003	3	0	0	3	0	0	copy fasta	ESRRA	chr11	64300524	64321743
ESRRA_chr11_64300524_64321743	0/0	t0005	1003	2	2	0	0	0	0	copy fasta	ESRRA	chr11	64300524	64321743
ESRRA_chr11_64300524_64321743	0/0	t0006	1003	1	0	0	0	1	0	copy fasta	ESRRA	chr11	64300524	64321743
ESRRA_chr11_64300524_64321743	0/0	t0007	1003	1	0	0	1	0	0	copy fasta	ESRRA	chr11	64300524	64321743
ESRRA_chr11_64300524_64321743	0/0	t0008	1003	1	0	1	0	0	0	copy fasta	ESRRA	chr11	64300524	64321743
ESRRA_chr11_64300524_64321743	0/0	t0009	1003	1	0	0	1	0	0	copy fasta	ESRRA	chr11	64300524	64321743
ESRRB_chr14_76371137_76506837	0/1	t0001	3645	93	8	28	38	8	10	copy fasta	ESRRB	chr14	76371137	76506837
ESRRB_chr14_76371137_76506837	0/0	t0002	3646	71	10	9	38	0	14	copy fasta	ESRRB	chr14	76371137	76506837
ESRRB_chr14_76371137_76506837	0/0	t0003	3645	45	6	7	26	2	4	copy fasta	ESRRB	chr14	76371137	76506837
ESRRB_chr14_76371137_76506837	0/0	t0004	3645	13	4	2	3	1	3	copy fasta	ESRRB	chr14	76371137	76506837
ESRRB_chr14_76371137_76506837	1/0	t0005	3645	12	10	1	0	0	0	copy fasta	ESRRB	chr14	76371137	76506837
ESRRB_chr14_76371137_76506837	0/0	t0006	3645	12	12	0	0	0	0	copy fasta	ESRRB	chr14	76371137	76506837
ESRRB_chr14_76371137_76506837	0/0	t0007	3645	9	9	0	0	0	0	copy fasta	ESRRB	chr14	76371137	76506837
ESRRB_chr14_76371137_76506837	0/0	t0008	3645	7	0	0	5	1	1	copy fasta	ESRRB	chr14	76371137	76506837
ESRRB_chr14_76371137_76506837	0/0	t0009	3645	7	6	1	0	0	0	copy fasta	ESRRB	chr14	76371137	76506837
ESRRB_chr14_76371137_76506837	0/0	t0010	3645	7	1	0	6	0	0	copy fasta	ESRRB	chr14	76371137	76506837
ESRRB_chr14_76371137_76506837	0/0	t0011	3646	5	1	3	1	0	0	copy fasta	ESRRB	chr14	76371137	76506837
ESRRB_chr14_76371137_76506837	0/0	t0012	3645	3	0	0	3	0	0	copy fasta	ESRRB	chr14	76371137	76506837
ESRRB_chr14_76371137_76506837	0/0	t0013	3646	3	3	0	0	0	0	copy fasta	ESRRB	chr14	76371137	76506837
ESRRB_chr14_76371137_76506837	0/0	t0014	3645	2	2	0	0	0	0	copy fasta	ESRRB	chr14	76371137	76506837
ESRRB_chr14_76371137_76506837	0/0	t0015	3646	2	1	1	0	0	0	copy fasta	ESRRB	chr14	76371137	76506837
ESRRB_chr14_76371137_76506837	0/0	t0016	3645	2	0	1	0	0	1	copy fasta	ESRRB	chr14	76371137	76506837
ESRRB_chr14_76371137_76506837	0/0	t0017	3645	2	2	0	0	0	0	copy fasta	ESRRB	chr14	76371137	76506837
ESRRB_chr14_76371137_76506837	0/0	t0018	3645	2	2	0	0	0	0	copy fasta	ESRRB	chr14	76371137	76506837
ESRRB_chr14_76371137_76506837	0/0	t0019	3645	2	0	2	0	0	0	copy fasta	ESRRB	chr14	76371137	76506837
ESRRB_chr14_76371137_76506837	0/0	t0020	3645	2	0	0	2	0	0	copy fasta	ESRRB	chr14	76371137	76506837
ESRRB_chr14_76371137_76506837	0/0	t0021	3645	2	0	0	2	0	0	copy fasta	ESRRB	chr14	76371137	76506837