JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
ESRRB_chr14_76371137_76506837	0/0	t0022	3645	1	0	0	0	1	0	copy fasta	ESRRB	chr14	76371137	76506837
ESRRB_chr14_76371137_76506837	0/0	t0023	3645	1	1	0	0	0	0	copy fasta	ESRRB	chr14	76371137	76506837
ESRRB_chr14_76371137_76506837	0/0	t0024	3645	1	1	0	0	0	0	copy fasta	ESRRB	chr14	76371137	76506837
ESRRB_chr14_76371137_76506837	0/0	t0025	3645	1	0	1	0	0	0	copy fasta	ESRRB	chr14	76371137	76506837
ESRRB_chr14_76371137_76506837	0/0	t0026	3645	1	1	0	0	0	0	copy fasta	ESRRB	chr14	76371137	76506837
ESRRB_chr14_76371137_76506837	0/0	t0027	3645	1	1	0	0	0	0	copy fasta	ESRRB	chr14	76371137	76506837
ESRRB_chr14_76371137_76506837	0/0	t0028	3645	1	0	0	1	0	0	copy fasta	ESRRB	chr14	76371137	76506837
ESRRB_chr14_76371137_76506837	0/0	t0029	3645	1	1	0	0	0	0	copy fasta	ESRRB	chr14	76371137	76506837
ESRRB_chr14_76371137_76506837	0/0	t0030	3645	1	0	0	0	1	0	copy fasta	ESRRB	chr14	76371137	76506837
ESRRB_chr14_76371137_76506837	0/0	t0031	3645	1	1	0	0	0	0	copy fasta	ESRRB	chr14	76371137	76506837
ESRRB_chr14_76371137_76506837	0/0	t0032	3645	1	1	0	0	0	0	copy fasta	ESRRB	chr14	76371137	76506837
ESRRB_chr14_76371137_76506837	0/0	t0033	3646	1	0	0	0	0	1	copy fasta	ESRRB	chr14	76371137	76506837
ESRRB_chr14_76371137_76506837	0/0	t0034	3646	1	1	0	0	0	0	copy fasta	ESRRB	chr14	76371137	76506837
ESRRB_chr14_76371137_76506837	0/0	t0035	3646	1	0	0	1	0	0	copy fasta	ESRRB	chr14	76371137	76506837
ESRRB_chr14_76371137_76506837	0/0	t0036	3645	1	1	0	0	0	0	copy fasta	ESRRB	chr14	76371137	76506837
ESRRG_chr1_216498251_216728429	0/0	t0001	3820	91	0	22	53	1	15	copy fasta	ESRRG	chr1	216498251	216728429
ESRRG_chr1_216498251_216728429	0/0	t0002	3819	81	21	15	30	4	11	copy fasta	ESRRG	chr1	216498251	216728429
ESRRG_chr1_216498251_216728429	1/1	t0003	3819	30	3	7	17	0	1	copy fasta	ESRRG	chr1	216498251	216728429
ESRRG_chr1_216498251_216728429	0/0	t0004	3822	28	26	1	0	1	0	copy fasta	ESRRG	chr1	216498251	216728429
ESRRG_chr1_216498251_216728429	0/0	t0005	3820	10	10	0	0	0	0	copy fasta	ESRRG	chr1	216498251	216728429
ESRRG_chr1_216498251_216728429	0/0	t0006	3819	6	5	1	0	0	0	copy fasta	ESRRG	chr1	216498251	216728429
ESRRG_chr1_216498251_216728429	0/0	t0007	3820	4	0	0	4	0	0	copy fasta	ESRRG	chr1	216498251	216728429
ESRRG_chr1_216498251_216728429	0/0	t0008	3819	4	0	1	0	1	2	copy fasta	ESRRG	chr1	216498251	216728429
ESRRG_chr1_216498251_216728429	0/0	t0009	3820	3	0	1	2	0	0	copy fasta	ESRRG	chr1	216498251	216728429
ESRRG_chr1_216498251_216728429	0/0	t0010	3820	3	2	1	0	0	0	copy fasta	ESRRG	chr1	216498251	216728429
ESRRG_chr1_216498251_216728429	0/0	t0011	3819	3	3	0	0	0	0	copy fasta	ESRRG	chr1	216498251	216728429
ESRRG_chr1_216498251_216728429	0/0	t0012	3820	3	0	0	3	0	0	copy fasta	ESRRG	chr1	216498251	216728429
ESRRG_chr1_216498251_216728429	0/0	t0013	3820	2	0	0	2	0	0	copy fasta	ESRRG	chr1	216498251	216728429
ESRRG_chr1_216498251_216728429	0/0	t0014	3820	2	2	0	0	0	0	copy fasta	ESRRG	chr1	216498251	216728429
ESRRG_chr1_216498251_216728429	0/0	t0015	3819	2	2	0	0	0	0	copy fasta	ESRRG	chr1	216498251	216728429
ESRRG_chr1_216498251_216728429	0/0	t0016	3820	1	0	0	1	0	0	copy fasta	ESRRG	chr1	216498251	216728429
ESRRG_chr1_216498251_216728429	0/0	t0017	3820	1	1	0	0	0	0	copy fasta	ESRRG	chr1	216498251	216728429
ESRRG_chr1_216498251_216728429	0/0	t0018	3820	1	1	0	0	0	0	copy fasta	ESRRG	chr1	216498251	216728429
ESRRG_chr1_216498251_216728429	0/0	t0019	3820	1	0	0	1	0	0	copy fasta	ESRRG	chr1	216498251	216728429
ESRRG_chr1_216498251_216728429	0/0	t0020	3820	1	0	0	0	1	0	copy fasta	ESRRG	chr1	216498251	216728429
ESRRG_chr1_216498251_216728429	0/0	t0021	3819	1	0	1	0	0	0	copy fasta	ESRRG	chr1	216498251	216728429
ESRRG_chr1_216498251_216728429	0/0	t0022	3819	1	1	0	0	0	0	copy fasta	ESRRG	chr1	216498251	216728429
ESRRG_chr1_216498251_216728429	0/0	t0023	3819	1	1	0	0	0	0	copy fasta	ESRRG	chr1	216498251	216728429
ESRRG_chr1_216498251_216728429	0/0	t0024	3819	1	0	0	1	0	0	copy fasta	ESRRG	chr1	216498251	216728429
ESRRG_chr1_216498251_216728429	0/0	t0025	3819	1	0	0	0	0	1	copy fasta	ESRRG	chr1	216498251	216728429
ESRRG_chr1_216498251_216728429	0/0	t0026	3819	1	0	0	1	0	0	copy fasta	ESRRG	chr1	216498251	216728429
ESRRG_chr1_216498251_216728429	0/0	t0027	3819	1	1	0	0	0	0	copy fasta	ESRRG	chr1	216498251	216728429
ESRRG_chr1_216498251_216728429	0/0	t0028	3819	1	1	0	0	0	0	copy fasta	ESRRG	chr1	216498251	216728429
ESRRG_chr1_216498251_216728429	0/0	t0029	3819	1	0	0	1	0	0	copy fasta	ESRRG	chr1	216498251	216728429
ESS2_chr22_19125279_19149651	1/0	t0001	3929	234	49	49	91	13	31	copy fasta	ESS2	chr22	19125279	19149651
ESS2_chr22_19125279_19149651	0/1	t0002	3929	55	10	8	19	5	12	copy fasta	ESS2	chr22	19125279	19149651
ESS2_chr22_19125279_19149651	0/0	t0003	3929	35	0	4	29	0	2	copy fasta	ESS2	chr22	19125279	19149651
ESS2_chr22_19125279_19149651	0/0	t0004	3929	30	0	8	17	0	5	copy fasta	ESS2	chr22	19125279	19149651
ESS2_chr22_19125279_19149651	0/0	t0005	3929	8	8	0	0	0	0	copy fasta	ESS2	chr22	19125279	19149651
ESS2_chr22_19125279_19149651	0/0	t0006	3929	7	0	0	7	0	0	copy fasta	ESS2	chr22	19125279	19149651