JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
ESS2_chr22_19125279_19149651	0/0	t0007	3929	7	7	0	0	0	0	copy fasta	ESS2	chr22	19125279	19149651
ESS2_chr22_19125279_19149651	0/0	t0008	3929	6	2	0	4	0	0	copy fasta	ESS2	chr22	19125279	19149651
ESS2_chr22_19125279_19149651	0/0	t0009	3929	5	0	0	5	0	0	copy fasta	ESS2	chr22	19125279	19149651
ESS2_chr22_19125279_19149651	0/0	t0010	3929	5	5	0	0	0	0	copy fasta	ESS2	chr22	19125279	19149651
ESS2_chr22_19125279_19149651	0/0	t0011	3929	5	0	0	5	0	0	copy fasta	ESS2	chr22	19125279	19149651
ESS2_chr22_19125279_19149651	0/0	t0012	3929	4	0	2	2	0	0	copy fasta	ESS2	chr22	19125279	19149651
ESS2_chr22_19125279_19149651	0/0	t0013	3929	3	3	0	0	0	0	copy fasta	ESS2	chr22	19125279	19149651
ESS2_chr22_19125279_19149651	0/0	t0014	3929	3	2	1	0	0	0	copy fasta	ESS2	chr22	19125279	19149651
ESS2_chr22_19125279_19149651	0/0	t0015	3929	2	0	0	2	0	0	copy fasta	ESS2	chr22	19125279	19149651
ESS2_chr22_19125279_19149651	0/0	t0016	3929	2	0	0	2	0	0	copy fasta	ESS2	chr22	19125279	19149651
ESS2_chr22_19125279_19149651	0/0	t0017	3929	2	1	1	0	0	0	copy fasta	ESS2	chr22	19125279	19149651
ESS2_chr22_19125279_19149651	0/0	t0018	3929	1	1	0	0	0	0	copy fasta	ESS2	chr22	19125279	19149651
ESS2_chr22_19125279_19149651	0/0	t0019	3929	1	0	1	0	0	0	copy fasta	ESS2	chr22	19125279	19149651
ESS2_chr22_19125279_19149651	0/0	t0020	3929	1	1	0	0	0	0	copy fasta	ESS2	chr22	19125279	19149651
ESS2_chr22_19125279_19149651	0/0	t0021	3929	1	1	0	0	0	0	copy fasta	ESS2	chr22	19125279	19149651
ESS2_chr22_19125279_19149651	0/0	t0022	3929	1	0	0	1	0	0	copy fasta	ESS2	chr22	19125279	19149651
ESS2_chr22_19125279_19149651	0/0	t0023	3929	1	0	0	1	0	0	copy fasta	ESS2	chr22	19125279	19149651
ESS2_chr22_19125279_19149651	0/0	t0024	3929	1	0	0	1	0	0	copy fasta	ESS2	chr22	19125279	19149651
ESS2_chr22_19125279_19149651	0/0	t0025	3929	1	0	0	1	0	0	copy fasta	ESS2	chr22	19125279	19149651
ESS2_chr22_19125279_19149651	0/0	t0026	3929	1	0	0	1	0	0	copy fasta	ESS2	chr22	19125279	19149651
ESS2_chr22_19125279_19149651	0/0	t0027	3929	1	0	1	0	0	0	copy fasta	ESS2	chr22	19125279	19149651
ESS2_chr22_19125279_19149651	0/0	t0028	3929	1	0	1	0	0	0	copy fasta	ESS2	chr22	19125279	19149651
ESS2_chr22_19125279_19149651	0/0	t0029	3929	1	1	0	0	0	0	copy fasta	ESS2	chr22	19125279	19149651
ESS2_chr22_19125279_19149651	0/0	t0030	3929	1	1	0	0	0	0	copy fasta	ESS2	chr22	19125279	19149651
ESS2_chr22_19125279_19149651	0/0	t0031	3929	1	0	0	1	0	0	copy fasta	ESS2	chr22	19125279	19149651
ESS2_chr22_19125279_19149651	0/0	t0032	3929	1	0	0	1	0	0	copy fasta	ESS2	chr22	19125279	19149651
ESS2_chr22_19125279_19149651	0/0	t0033	3929	1	1	0	0	0	0	copy fasta	ESS2	chr22	19125279	19149651
ESS2_chr22_19125279_19149651	0/0	t0034	3929	1	0	0	1	0	0	copy fasta	ESS2	chr22	19125279	19149651
ESS2_chr22_19125279_19149651	0/0	t0035	3929	1	0	0	1	0	0	copy fasta	ESS2	chr22	19125279	19149651
ESS2_chr22_19125279_19149651	0/0	t0036	3929	1	1	0	0	0	0	copy fasta	ESS2	chr22	19125279	19149651
ESX1_chrX_104245038_104259933	1/1	t0001	275	297	60	54	138	13	30	copy fasta	ESX1	chrX	104245038	104259933
ESX1_chrX_104245038_104259933	0/0	t0002	275	13	12	1	0	0	0	copy fasta	ESX1	chrX	104245038	104259933
ESX1_chrX_104245038_104259933	0/0	t0003	276	1	0	0	1	0	0	copy fasta	ESX1	chrX	104245038	104259933
ESX1_chrX_104245038_104259933	0/0	t0004	275	1	0	1	0	0	0	copy fasta	ESX1	chrX	104245038	104259933
ESX1_chrX_104245038_104259933	0/0	t0005	275	1	0	1	0	0	0	copy fasta	ESX1	chrX	104245038	104259933
ESYT1_chr12_56123267_56149674	1/1	t0001	866	354	85	64	154	18	31	copy fasta	ESYT1	chr12	56123267	56149674
ESYT1_chr12_56123267_56149674	0/0	t0002	866	8	0	0	8	0	0	copy fasta	ESYT1	chr12	56123267	56149674
ESYT1_chr12_56123267_56149674	0/0	t0003	866	2	0	0	2	0	0	copy fasta	ESYT1	chr12	56123267	56149674
ESYT1_chr12_56123267_56149674	0/0	t0004	866	2	2	0	0	0	0	copy fasta	ESYT1	chr12	56123267	56149674
ESYT1_chr12_56123267_56149674	0/0	t0005	866	2	0	0	2	0	0	copy fasta	ESYT1	chr12	56123267	56149674
ESYT1_chr12_56123267_56149674	0/0	t0006	866	1	0	0	0	0	1	copy fasta	ESYT1	chr12	56123267	56149674
ESYT1_chr12_56123267_56149674	0/0	t0007	866	1	1	0	0	0	0	copy fasta	ESYT1	chr12	56123267	56149674
ESYT2_chr7_158725997_158834509	1/0	t0001	3302	164	23	37	76	7	20	copy fasta	ESYT2	chr7	158725997	158834509
ESYT2_chr7_158725997_158834509	0/0	t0002	3302	98	23	11	56	2	6	copy fasta	ESYT2	chr7	158725997	158834509
ESYT2_chr7_158725997_158834509	0/0	t0003	3302	21	0	0	21	0	0	copy fasta	ESYT2	chr7	158725997	158834509
ESYT2_chr7_158725997_158834509	0/1	t0004	3297	20	4	7	6	2	0	copy fasta	ESYT2	chr7	158725997	158834509
ESYT2_chr7_158725997_158834509	0/0	t0005	3297	6	0	0	4	0	2	copy fasta	ESYT2	chr7	158725997	158834509
ESYT2_chr7_158725997_158834509	0/0	t0006	3303	5	3	2	0	0	0	copy fasta	ESYT2	chr7	158725997	158834509
ESYT2_chr7_158725997_158834509	0/0	t0007	3297	4	4	0	0	0	0	copy fasta	ESYT2	chr7	158725997	158834509
ESYT2_chr7_158725997_158834509	0/0	t0008	3302	3	3	0	0	0	0	copy fasta	ESYT2	chr7	158725997	158834509