JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
ESYT2_chr7_158725997_158834509	0/0	t0009	3302	3	3	0	0	0	0	copy fasta	ESYT2	chr7	158725997	158834509
ESYT2_chr7_158725997_158834509	0/0	t0010	3302	3	1	2	0	0	0	copy fasta	ESYT2	chr7	158725997	158834509
ESYT2_chr7_158725997_158834509	0/0	t0011	3286	3	3	0	0	0	0	copy fasta	ESYT2	chr7	158725997	158834509
ESYT2_chr7_158725997_158834509	0/0	t0012	3302	2	1	1	0	0	0	copy fasta	ESYT2	chr7	158725997	158834509
ESYT2_chr7_158725997_158834509	0/0	t0013	3302	2	0	0	2	0	0	copy fasta	ESYT2	chr7	158725997	158834509
ESYT2_chr7_158725997_158834509	0/0	t0014	3302	2	2	0	0	0	0	copy fasta	ESYT2	chr7	158725997	158834509
ESYT2_chr7_158725997_158834509	0/0	t0015	3302	2	2	0	0	0	0	copy fasta	ESYT2	chr7	158725997	158834509
ESYT2_chr7_158725997_158834509	0/0	t0016	3302	2	2	0	0	0	0	copy fasta	ESYT2	chr7	158725997	158834509
ESYT2_chr7_158725997_158834509	0/0	t0017	3302	2	2	0	0	0	0	copy fasta	ESYT2	chr7	158725997	158834509
ESYT2_chr7_158725997_158834509	0/0	t0018	3303	2	0	2	0	0	0	copy fasta	ESYT2	chr7	158725997	158834509
ESYT2_chr7_158725997_158834509	0/0	t0019	3297	1	0	0	0	1	0	copy fasta	ESYT2	chr7	158725997	158834509
ESYT2_chr7_158725997_158834509	0/0	t0020	3302	1	0	0	1	0	0	copy fasta	ESYT2	chr7	158725997	158834509
ESYT2_chr7_158725997_158834509	0/0	t0021	3297	1	1	0	0	0	0	copy fasta	ESYT2	chr7	158725997	158834509
ESYT2_chr7_158725997_158834509	0/0	t0022	3303	1	1	0	0	0	0	copy fasta	ESYT2	chr7	158725997	158834509
ESYT2_chr7_158725997_158834509	0/0	t0023	3297	1	1	0	0	0	0	copy fasta	ESYT2	chr7	158725997	158834509
ESYT2_chr7_158725997_158834509	0/0	t0024	3302	1	0	0	1	0	0	copy fasta	ESYT2	chr7	158725997	158834509
ESYT2_chr7_158725997_158834509	0/0	t0025	3302	1	1	0	0	0	0	copy fasta	ESYT2	chr7	158725997	158834509
ESYT2_chr7_158725997_158834509	0/0	t0026	3297	1	0	0	0	0	1	copy fasta	ESYT2	chr7	158725997	158834509
ESYT2_chr7_158725997_158834509	0/0	t0027	3302	1	0	0	1	0	0	copy fasta	ESYT2	chr7	158725997	158834509
ESYT2_chr7_158725997_158834509	0/0	t0028	3302	1	0	0	1	0	0	copy fasta	ESYT2	chr7	158725997	158834509
ESYT2_chr7_158725997_158834509	0/0	t0029	3302	1	0	0	0	0	1	copy fasta	ESYT2	chr7	158725997	158834509
ESYT2_chr7_158725997_158834509	0/0	t0030	3303	1	0	0	0	0	1	copy fasta	ESYT2	chr7	158725997	158834509
ESYT2_chr7_158725997_158834509	0/0	t0031	3302	1	0	0	1	0	0	copy fasta	ESYT2	chr7	158725997	158834509
ESYT2_chr7_158725997_158834509	0/0	t0032	3286	1	1	0	0	0	0	copy fasta	ESYT2	chr7	158725997	158834509
ESYT2_chr7_158725997_158834509	0/0	t0033	3302	1	1	0	0	0	0	copy fasta	ESYT2	chr7	158725997	158834509
ESYT2_chr7_158725997_158834509	0/0	t0034	3302	1	1	0	0	0	0	copy fasta	ESYT2	chr7	158725997	158834509
ESYT2_chr7_158725997_158834509	0/0	t0035	3302	1	0	0	1	0	0	copy fasta	ESYT2	chr7	158725997	158834509
ESYT2_chr7_158725997_158834509	0/0	t0036	3286	1	1	0	0	0	0	copy fasta	ESYT2	chr7	158725997	158834509
ESYT2_chr7_158725997_158834509	0/0	t0037	3302	1	0	0	1	0	0	copy fasta	ESYT2	chr7	158725997	158834509
ESYT2_chr7_158725997_158834509	0/0	t0038	3302	1	0	0	1	0	0	copy fasta	ESYT2	chr7	158725997	158834509
ESYT2_chr7_158725997_158834509	0/0	t0039	3302	1	1	0	0	0	0	copy fasta	ESYT2	chr7	158725997	158834509
ESYT2_chr7_158725997_158834509	0/0	t0040	3302	1	0	0	0	0	1	copy fasta	ESYT2	chr7	158725997	158834509
ESYT2_chr7_158725997_158834509	0/0	t0041	3302	1	1	0	0	0	0	copy fasta	ESYT2	chr7	158725997	158834509
ESYT2_chr7_158725997_158834509	0/0	t0042	3302	1	1	0	0	0	0	copy fasta	ESYT2	chr7	158725997	158834509
ESYT2_chr7_158725997_158834509	0/0	t0043	3302	1	0	0	1	0	0	copy fasta	ESYT2	chr7	158725997	158834509
ESYT2_chr7_158725997_158834509	0/0	t0044	3302	1	1	0	0	0	0	copy fasta	ESYT2	chr7	158725997	158834509
ESYT3_chr3_138429616_138484925	0/1	t0001	3251	182	17	22	111	5	26	copy fasta	ESYT3	chr3	138429616	138484925
ESYT3_chr3_138429616_138484925	1/0	t0002	3255	86	33	22	8	6	16	copy fasta	ESYT3	chr3	138429616	138484925
ESYT3_chr3_138429616_138484925	0/0	t0003	3251	23	20	3	0	0	0	copy fasta	ESYT3	chr3	138429616	138484925
ESYT3_chr3_138429616_138484925	0/0	t0004	3251	22	10	9	0	0	3	copy fasta	ESYT3	chr3	138429616	138484925
ESYT3_chr3_138429616_138484925	0/0	t0005	3251	4	0	3	0	0	1	copy fasta	ESYT3	chr3	138429616	138484925
ESYT3_chr3_138429616_138484925	0/0	t0006	3251	3	0	0	3	0	0	copy fasta	ESYT3	chr3	138429616	138484925
ESYT3_chr3_138429616_138484925	0/0	t0007	3251	2	2	0	0	0	0	copy fasta	ESYT3	chr3	138429616	138484925
ESYT3_chr3_138429616_138484925	0/0	t0008	3251	2	2	0	0	0	0	copy fasta	ESYT3	chr3	138429616	138484925
ESYT3_chr3_138429616_138484925	0/0	t0009	3251	2	2	0	0	0	0	copy fasta	ESYT3	chr3	138429616	138484925
ESYT3_chr3_138429616_138484925	0/0	t0010	3251	1	1	0	0	0	0	copy fasta	ESYT3	chr3	138429616	138484925
ESYT3_chr3_138429616_138484925	0/0	t0011	3251	1	1	0	0	0	0	copy fasta	ESYT3	chr3	138429616	138484925
ESYT3_chr3_138429616_138484925	0/0	t0012	3251	1	1	0	0	0	0	copy fasta	ESYT3	chr3	138429616	138484925
ESYT3_chr3_138429616_138484925	0/0	t0013	3255	1	0	0	0	1	0	copy fasta	ESYT3	chr3	138429616	138484925
ESYT3_chr3_138429616_138484925	0/0	t0014	3251	1	0	0	1	0	0	copy fasta	ESYT3	chr3	138429616	138484925