Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
AICDA_chr12_8597170_8617859	0/0	t0016	2206	2	2	0	0	0	0	copy fasta	AICDA	chr12	8597170	8617859
AICDA_chr12_8597170_8617859	1/0	t0017	2207	1	0	0	0	0	0	copy fasta	AICDA	chr12	8597170	8617859
AICDA_chr12_8597170_8617859	0/0	t0018	2206	1	1	0	0	0	0	copy fasta	AICDA	chr12	8597170	8617859
AICDA_chr12_8597170_8617859	0/0	t0019	2205	1	1	0	0	0	0	copy fasta	AICDA	chr12	8597170	8617859
AICDA_chr12_8597170_8617859	0/0	t0020	2206	1	0	1	0	0	0	copy fasta	AICDA	chr12	8597170	8617859
AICDA_chr12_8597170_8617859	0/0	t0021	2207	1	0	0	1	0	0	copy fasta	AICDA	chr12	8597170	8617859
AICDA_chr12_8597170_8617859	0/0	t0022	2207	1	0	0	1	0	0	copy fasta	AICDA	chr12	8597170	8617859
AICDA_chr12_8597170_8617859	0/0	t0023	2207	1	1	0	0	0	0	copy fasta	AICDA	chr12	8597170	8617859
AICDA_chr12_8597170_8617859	0/0	t0024	2205	1	1	0	0	0	0	copy fasta	AICDA	chr12	8597170	8617859
AICDA_chr12_8597170_8617859	0/0	t0025	2208	1	0	0	1	0	0	copy fasta	AICDA	chr12	8597170	8617859
AICDA_chr12_8597170_8617859	0/0	t0026	2206	1	1	0	0	0	0	copy fasta	AICDA	chr12	8597170	8617859
AICDA_chr12_8597170_8617859	0/0	t0027	2206	1	1	0	0	0	0	copy fasta	AICDA	chr12	8597170	8617859
AICDA_chr12_8597170_8617859	0/0	t0028	2207	1	1	0	0	0	0	copy fasta	AICDA	chr12	8597170	8617859
AIDA_chr1_222663013_222717491	0/0	t0001	2055	150	48	29	57	2	14	copy fasta	AIDA	chr1	222663013	222717491
AIDA_chr1_222663013_222717491	0/1	t0002	2055	147	17	25	74	10	20	copy fasta	AIDA	chr1	222663013	222717491
AIDA_chr1_222663013_222717491	0/0	t0003	2053	43	10	3	23	0	7	copy fasta	AIDA	chr1	222663013	222717491
AIDA_chr1_222663013_222717491	0/0	t0004	2053	10	7	3	0	0	0	copy fasta	AIDA	chr1	222663013	222717491
AIDA_chr1_222663013_222717491	0/0	t0005	2055	5	5	0	0	0	0	copy fasta	AIDA	chr1	222663013	222717491
AIDA_chr1_222663013_222717491	0/0	t0006	2055	4	0	0	4	0	0	copy fasta	AIDA	chr1	222663013	222717491
AIDA_chr1_222663013_222717491	0/0	t0007	2055	3	3	0	0	0	0	copy fasta	AIDA	chr1	222663013	222717491
AIDA_chr1_222663013_222717491	0/0	t0008	2055	2	0	0	0	0	2	copy fasta	AIDA	chr1	222663013	222717491
AIDA_chr1_222663013_222717491	0/0	t0009	2055	1	1	0	0	0	0	copy fasta	AIDA	chr1	222663013	222717491
AIDA_chr1_222663013_222717491	1/0	t0010	2055	1	0	0	0	0	0	copy fasta	AIDA	chr1	222663013	222717491
AIDA_chr1_222663013_222717491	0/0	t0011	2055	1	0	0	0	0	1	copy fasta	AIDA	chr1	222663013	222717491
AIDA_chr1_222663013_222717491	0/0	t0012	2055	1	1	0	0	0	0	copy fasta	AIDA	chr1	222663013	222717491
AIF1L_chr9_131091531_131128144	0/1	t0001	2922	224	40	49	96	11	27	copy fasta	AIF1L	chr9	131091531	131128144
AIF1L_chr9_131091531_131128144	0/0	t0002	2924	126	22	12	72	4	16	copy fasta	AIF1L	chr9	131091531	131128144
AIF1L_chr9_131091531_131128144	1/0	t0003	2922	12	11	0	0	0	0	copy fasta	AIF1L	chr9	131091531	131128144
AIF1L_chr9_131091531_131128144	0/0	t0004	2924	8	0	3	5	0	0	copy fasta	AIF1L	chr9	131091531	131128144
AIF1L_chr9_131091531_131128144	0/0	t0005	2922	5	0	0	5	0	0	copy fasta	AIF1L	chr9	131091531	131128144
AIF1L_chr9_131091531_131128144	0/0	t0006	2923	4	4	0	0	0	0	copy fasta	AIF1L	chr9	131091531	131128144
AIF1L_chr9_131091531_131128144	0/0	t0007	2923	3	2	1	0	0	0	copy fasta	AIF1L	chr9	131091531	131128144
AIF1L_chr9_131091531_131128144	0/0	t0008	2923	3	3	0	0	0	0	copy fasta	AIF1L	chr9	131091531	131128144
AIF1L_chr9_131091531_131128144	0/0	t0009	2924	3	0	0	0	0	3	copy fasta	AIF1L	chr9	131091531	131128144
AIF1L_chr9_131091531_131128144	0/0	t0010	2922	3	0	0	3	0	0	copy fasta	AIF1L	chr9	131091531	131128144
AIF1L_chr9_131091531_131128144	0/0	t0011	2925	2	0	1	0	0	1	copy fasta	AIF1L	chr9	131091531	131128144
AIF1L_chr9_131091531_131128144	0/0	t0012	2923	2	0	0	2	0	0	copy fasta	AIF1L	chr9	131091531	131128144
AIF1L_chr9_131091531_131128144	0/0	t0013	2923	2	1	1	0	0	0	copy fasta	AIF1L	chr9	131091531	131128144
AIF1L_chr9_131091531_131128144	0/0	t0014	2923	2	0	0	1	0	1	copy fasta	AIF1L	chr9	131091531	131128144
AIF1L_chr9_131091531_131128144	0/0	t0015	2923	2	2	0	0	0	0	copy fasta	AIF1L	chr9	131091531	131128144
AIF1L_chr9_131091531_131128144	0/0	t0016	2922	2	0	1	0	0	1	copy fasta	AIF1L	chr9	131091531	131128144
AIF1L_chr9_131091531_131128144	0/0	t0017	2923	2	2	0	0	0	0	copy fasta	AIF1L	chr9	131091531	131128144
AIF1L_chr9_131091531_131128144	0/0	t0018	2923	1	1	0	0	0	0	copy fasta	AIF1L	chr9	131091531	131128144
AIF1L_chr9_131091531_131128144	0/0	t0019	2925	1	0	1	0	0	0	copy fasta	AIF1L	chr9	131091531	131128144
AIF1L_chr9_131091531_131128144	0/0	t0020	2923	1	1	0	0	0	0	copy fasta	AIF1L	chr9	131091531	131128144
AIF1L_chr9_131091531_131128144	0/0	t0021	2924	1	0	0	1	0	0	copy fasta	AIF1L	chr9	131091531	131128144
AIF1L_chr9_131091531_131128144	0/0	t0022	2924	1	0	0	1	0	0	copy fasta	AIF1L	chr9	131091531	131128144
AIF1L_chr9_131091531_131128144	0/0	t0023	2922	1	1	0	0	0	0	copy fasta	AIF1L	chr9	131091531	131128144
AIF1L_chr9_131091531_131128144	0/0	t0024	2923	1	1	0	0	0	0	copy fasta	AIF1L	chr9	131091531	131128144
AIF1L_chr9_131091531_131128144	0/0	t0025	2922	1	1	0	0	0	0	copy fasta	AIF1L	chr9	131091531	131128144