JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
ESYT3_chr3_138429616_138484925	0/0	t0015	3251	1	1	0	0	0	0	copy fasta	ESYT3	chr3	138429616	138484925
ESYT3_chr3_138429616_138484925	0/0	t0016	3251	1	1	0	0	0	0	copy fasta	ESYT3	chr3	138429616	138484925
ESYT3_chr3_138429616_138484925	0/0	t0017	3255	1	1	0	0	0	0	copy fasta	ESYT3	chr3	138429616	138484925
ESYT3_chr3_138429616_138484925	0/0	t0018	3251	1	0	0	1	0	0	copy fasta	ESYT3	chr3	138429616	138484925
ESYT3_chr3_138429616_138484925	0/0	t0019	3238	1	0	1	0	0	0	copy fasta	ESYT3	chr3	138429616	138484925
ESYT3_chr3_138429616_138484925	0/0	t0020	3251	1	1	0	0	0	0	copy fasta	ESYT3	chr3	138429616	138484925
ESYT3_chr3_138429616_138484925	0/0	t0021	3251	1	1	0	0	0	0	copy fasta	ESYT3	chr3	138429616	138484925
ETAA1_chr2_67392333_67417089	0/0	t0001	2168	296	57	50	142	12	35	copy fasta	ETAA1	chr2	67392333	67417089
ETAA1_chr2_67392333_67417089	0/1	t0002	2171	46	13	7	16	2	7	copy fasta	ETAA1	chr2	67392333	67417089
ETAA1_chr2_67392333_67417089	0/0	t0003	2162	9	9	0	0	0	0	copy fasta	ETAA1	chr2	67392333	67417089
ETAA1_chr2_67392333_67417089	0/0	t0004	2168	8	0	0	8	0	0	copy fasta	ETAA1	chr2	67392333	67417089
ETAA1_chr2_67392333_67417089	0/0	t0005	2168	6	0	3	0	1	2	copy fasta	ETAA1	chr2	67392333	67417089
ETAA1_chr2_67392333_67417089	0/0	t0006	2164	5	0	2	0	1	2	copy fasta	ETAA1	chr2	67392333	67417089
ETAA1_chr2_67392333_67417089	0/0	t0007	2164	4	4	0	0	0	0	copy fasta	ETAA1	chr2	67392333	67417089
ETAA1_chr2_67392333_67417089	1/0	t0008	2168	4	0	1	0	0	2	copy fasta	ETAA1	chr2	67392333	67417089
ETAA1_chr2_67392333_67417089	0/0	t0009	2168	3	3	0	0	0	0	copy fasta	ETAA1	chr2	67392333	67417089
ETAA1_chr2_67392333_67417089	0/0	t0010	2168	3	0	0	3	0	0	copy fasta	ETAA1	chr2	67392333	67417089
ETAA1_chr2_67392333_67417089	0/0	t0011	2168	2	2	0	0	0	0	copy fasta	ETAA1	chr2	67392333	67417089
ETAA1_chr2_67392333_67417089	0/0	t0012	2168	2	0	0	2	0	0	copy fasta	ETAA1	chr2	67392333	67417089
ETAA1_chr2_67392333_67417089	0/0	t0013	2168	2	0	0	2	0	0	copy fasta	ETAA1	chr2	67392333	67417089
ETAA1_chr2_67392333_67417089	0/0	t0014	2164	1	1	0	0	0	0	copy fasta	ETAA1	chr2	67392333	67417089
ETAA1_chr2_67392333_67417089	0/0	t0015	2168	1	0	0	1	0	0	copy fasta	ETAA1	chr2	67392333	67417089
ETAA1_chr2_67392333_67417089	0/0	t0016	2168	1	0	1	0	0	0	copy fasta	ETAA1	chr2	67392333	67417089
ETAA1_chr2_67392333_67417089	0/0	t0017	2171	1	1	0	0	0	0	copy fasta	ETAA1	chr2	67392333	67417089
ETDA_chrX_135247061_135258583	0/0	t0001	453	316	62	56	156	13	29	copy fasta	ETDA	chrX	135247061	135258583
ETDA_chrX_135247061_135258583	0/0	t0002	453	8	2	3	1	0	2	copy fasta	ETDA	chrX	135247061	135258583
ETDA_chrX_135247061_135258583	0/0	t0003	453	5	4	0	0	0	1	copy fasta	ETDA	chrX	135247061	135258583
ETDA_chrX_135247061_135258583	0/0	t0004	453	3	0	0	2	0	1	copy fasta	ETDA	chrX	135247061	135258583
ETDA_chrX_135247061_135258583	0/0	t0005	453	2	2	0	0	0	0	copy fasta	ETDA	chrX	135247061	135258583
ETDA_chrX_135247061_135258583	0/0	t0006	453	1	0	0	0	0	1	copy fasta	ETDA	chrX	135247061	135258583
ETDB_chrX_135113955_135125526	0/0	t0001	502	241	46	38	123	9	25	copy fasta	ETDB	chrX	135113955	135125526
ETDB_chrX_135113955_135125526	0/0	t0002	502	61	30	14	8	2	7	copy fasta	ETDB	chrX	135113955	135125526
ETDB_chrX_135113955_135125526	0/0	t0003	502	8	1	1	5	0	1	copy fasta	ETDB	chrX	135113955	135125526
ETDB_chrX_135113955_135125526	0/0	t0004	502	3	0	3	0	0	0	copy fasta	ETDB	chrX	135113955	135125526
ETDB_chrX_135113955_135125526	0/0	t0005	502	1	0	1	0	0	0	copy fasta	ETDB	chrX	135113955	135125526
ETF1_chr5_138501095_138548236	0/1	t0001	2369	296	71	63	117	10	34	copy fasta	ETF1	chr5	138501095	138548236
ETF1_chr5_138501095_138548236	1/0	t0002	2369	13	7	0	2	0	3	copy fasta	ETF1	chr5	138501095	138548236
ETF1_chr5_138501095_138548236	0/0	t0003	2369	8	4	3	0	0	1	copy fasta	ETF1	chr5	138501095	138548236
ETF1_chr5_138501095_138548236	0/0	t0004	2369	5	1	2	0	2	0	copy fasta	ETF1	chr5	138501095	138548236
ETF1_chr5_138501095_138548236	0/0	t0005	2369	3	2	1	0	0	0	copy fasta	ETF1	chr5	138501095	138548236
ETF1_chr5_138501095_138548236	0/0	t0006	2369	2	0	0	0	0	2	copy fasta	ETF1	chr5	138501095	138548236
ETF1_chr5_138501095_138548236	0/0	t0007	2369	2	0	0	0	0	2	copy fasta	ETF1	chr5	138501095	138548236
ETF1_chr5_138501095_138548236	0/0	t0008	2369	1	0	1	0	0	0	copy fasta	ETF1	chr5	138501095	138548236
ETF1_chr5_138501095_138548236	0/0	t0009	2369	1	1	0	0	0	0	copy fasta	ETF1	chr5	138501095	138548236
ETF1_chr5_138501095_138548236	0/0	t0010	2369	1	1	0	0	0	0	copy fasta	ETF1	chr5	138501095	138548236
ETF1_chr5_138501095_138548236	0/0	t0011	2369	1	0	0	1	0	0	copy fasta	ETF1	chr5	138501095	138548236
ETF1_chr5_138501095_138548236	0/0	t0012	2369	1	1	0	0	0	0	copy fasta	ETF1	chr5	138501095	138548236
ETFA_chr15_76210353_76316469	0/0	t0001	1288	121	11	25	65	5	15	copy fasta	ETFA	chr15	76210353	76316469
ETFA_chr15_76210353_76316469	0/1	t0002	1288	111	8	25	57	5	15	copy fasta	ETFA	chr15	76210353	76316469
ETFA_chr15_76210353_76316469	0/0	t0003	1288	43	35	5	0	1	2	copy fasta	ETFA	chr15	76210353	76316469