JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
ETFA_chr15_76210353_76316469	0/0	t0004	1284	36	17	5	11	1	2	copy fasta	ETFA	chr15	76210353	76316469
ETFA_chr15_76210353_76316469	1/0	t0005	1288	9	8	0	0	0	0	copy fasta	ETFA	chr15	76210353	76316469
ETFA_chr15_76210353_76316469	0/0	t0006	1288	5	5	0	0	0	0	copy fasta	ETFA	chr15	76210353	76316469
ETFA_chr15_76210353_76316469	0/0	t0007	1288	2	0	0	2	0	0	copy fasta	ETFA	chr15	76210353	76316469
ETFA_chr15_76210353_76316469	0/0	t0008	1288	2	0	0	0	0	2	copy fasta	ETFA	chr15	76210353	76316469
ETFA_chr15_76210353_76316469	0/0	t0009	1284	2	2	0	0	0	0	copy fasta	ETFA	chr15	76210353	76316469
ETFA_chr15_76210353_76316469	0/0	t0010	1288	1	1	0	0	0	0	copy fasta	ETFA	chr15	76210353	76316469
ETFA_chr15_76210353_76316469	0/0	t0011	1288	1	1	0	0	0	0	copy fasta	ETFA	chr15	76210353	76316469
ETFA_chr15_76210353_76316469	0/0	t0012	1213	1	1	0	0	0	0	copy fasta	ETFA	chr15	76210353	76316469
ETFA_chr15_76210353_76316469	0/0	t0013	1288	1	1	0	0	0	0	copy fasta	ETFA	chr15	76210353	76316469
ETFA_chr15_76210353_76316469	0/0	t0014	1288	1	0	0	1	0	0	copy fasta	ETFA	chr15	76210353	76316469
ETFBKMT_chr12_31654688_31678114	0/1	t0001	5340	58	15	14	20	4	4	copy fasta	ETFBKMT	chr12	31654688	31678114
ETFBKMT_chr12_31654688_31678114	0/0	t0002	5337	52	1	7	36	2	6	copy fasta	ETFBKMT	chr12	31654688	31678114
ETFBKMT_chr12_31654688_31678114	0/0	t0003	5339	48	8	4	31	0	5	copy fasta	ETFBKMT	chr12	31654688	31678114
ETFBKMT_chr12_31654688_31678114	0/0	t0004	5340	48	0	12	31	1	4	copy fasta	ETFBKMT	chr12	31654688	31678114
ETFBKMT_chr12_31654688_31678114	0/0	t0005	5340	38	3	9	23	1	2	copy fasta	ETFBKMT	chr12	31654688	31678114
ETFBKMT_chr12_31654688_31678114	0/0	t0006	5340	38	9	14	4	3	8	copy fasta	ETFBKMT	chr12	31654688	31678114
ETFBKMT_chr12_31654688_31678114	0/0	t0007	5341	27	9	7	10	0	1	copy fasta	ETFBKMT	chr12	31654688	31678114
ETFBKMT_chr12_31654688_31678114	0/0	t0008	5340	22	0	0	19	0	3	copy fasta	ETFBKMT	chr12	31654688	31678114
ETFBKMT_chr12_31654688_31678114	1/0	t0009	5340	9	8	0	0	0	0	copy fasta	ETFBKMT	chr12	31654688	31678114
ETFBKMT_chr12_31654688_31678114	0/0	t0010	5339	7	0	0	7	0	0	copy fasta	ETFBKMT	chr12	31654688	31678114
ETFBKMT_chr12_31654688_31678114	0/0	t0011	5340	7	0	1	4	1	1	copy fasta	ETFBKMT	chr12	31654688	31678114
ETFBKMT_chr12_31654688_31678114	0/0	t0012	5338	6	0	2	1	1	2	copy fasta	ETFBKMT	chr12	31654688	31678114
ETFBKMT_chr12_31654688_31678114	0/0	t0013	5340	6	6	0	0	0	0	copy fasta	ETFBKMT	chr12	31654688	31678114
ETFBKMT_chr12_31654688_31678114	0/0	t0014	5345	5	5	0	0	0	0	copy fasta	ETFBKMT	chr12	31654688	31678114
ETFBKMT_chr12_31654688_31678114	0/0	t0015	5336	4	4	0	0	0	0	copy fasta	ETFBKMT	chr12	31654688	31678114
ETFBKMT_chr12_31654688_31678114	0/0	t0016	5340	4	4	0	0	0	0	copy fasta	ETFBKMT	chr12	31654688	31678114
ETFBKMT_chr12_31654688_31678114	0/0	t0017	5340	4	4	0	0	0	0	copy fasta	ETFBKMT	chr12	31654688	31678114
ETFBKMT_chr12_31654688_31678114	0/0	t0018	5340	4	0	0	4	0	0	copy fasta	ETFBKMT	chr12	31654688	31678114
ETFBKMT_chr12_31654688_31678114	0/0	t0019	5340	4	0	4	0	0	0	copy fasta	ETFBKMT	chr12	31654688	31678114
ETFBKMT_chr12_31654688_31678114	0/0	t0020	5340	4	4	0	0	0	0	copy fasta	ETFBKMT	chr12	31654688	31678114
ETFBKMT_chr12_31654688_31678114	0/0	t0021	5337	4	3	1	0	0	0	copy fasta	ETFBKMT	chr12	31654688	31678114
ETFBKMT_chr12_31654688_31678114	0/0	t0022	5340	3	3	0	0	0	0	copy fasta	ETFBKMT	chr12	31654688	31678114
ETFBKMT_chr12_31654688_31678114	0/0	t0023	5341	2	2	0	0	0	0	copy fasta	ETFBKMT	chr12	31654688	31678114
ETFBKMT_chr12_31654688_31678114	0/0	t0024	5341	2	2	0	0	0	0	copy fasta	ETFBKMT	chr12	31654688	31678114
ETFBKMT_chr12_31654688_31678114	0/0	t0025	5338	2	0	0	2	0	0	copy fasta	ETFBKMT	chr12	31654688	31678114
ETFBKMT_chr12_31654688_31678114	0/0	t0026	5340	2	2	0	0	0	0	copy fasta	ETFBKMT	chr12	31654688	31678114
ETFBKMT_chr12_31654688_31678114	0/0	t0027	5341	2	0	1	1	0	0	copy fasta	ETFBKMT	chr12	31654688	31678114
ETFBKMT_chr12_31654688_31678114	0/0	t0028	5340	2	0	1	1	0	0	copy fasta	ETFBKMT	chr12	31654688	31678114
ETFBKMT_chr12_31654688_31678114	0/0	t0029	5339	1	0	0	1	0	0	copy fasta	ETFBKMT	chr12	31654688	31678114
ETFBKMT_chr12_31654688_31678114	0/0	t0030	5339	1	0	0	1	0	0	copy fasta	ETFBKMT	chr12	31654688	31678114
ETFBKMT_chr12_31654688_31678114	0/0	t0031	5339	1	0	1	0	0	0	copy fasta	ETFBKMT	chr12	31654688	31678114
ETFBKMT_chr12_31654688_31678114	0/0	t0032	5340	1	0	0	1	0	0	copy fasta	ETFBKMT	chr12	31654688	31678114
ETFBKMT_chr12_31654688_31678114	0/0	t0033	5340	1	0	0	1	0	0	copy fasta	ETFBKMT	chr12	31654688	31678114
ETFBKMT_chr12_31654688_31678114	0/0	t0034	5340	1	1	0	0	0	0	copy fasta	ETFBKMT	chr12	31654688	31678114
ETFBKMT_chr12_31654688_31678114	0/0	t0035	5337	1	0	0	0	0	1	copy fasta	ETFBKMT	chr12	31654688	31678114
ETFBKMT_chr12_31654688_31678114	0/0	t0036	5337	1	0	0	1	0	0	copy fasta	ETFBKMT	chr12	31654688	31678114
ETFBKMT_chr12_31654688_31678114	0/0	t0037	5338	1	0	0	1	0	0	copy fasta	ETFBKMT	chr12	31654688	31678114
ETFBKMT_chr12_31654688_31678114	0/0	t0038	5336	1	0	0	1	0	0	copy fasta	ETFBKMT	chr12	31654688	31678114
ETFBKMT_chr12_31654688_31678114	0/0	t0039	5341	1	0	0	1	0	0	copy fasta	ETFBKMT	chr12	31654688	31678114