JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
ETFBKMT_chr12_31654688_31678114	0/0	t0040	5340	1	0	0	0	0	1	copy fasta	ETFBKMT	chr12	31654688	31678114
ETFBKMT_chr12_31654688_31678114	0/0	t0041	5338	1	0	0	1	0	0	copy fasta	ETFBKMT	chr12	31654688	31678114
ETFBKMT_chr12_31654688_31678114	0/0	t0042	5345	1	0	0	0	1	0	copy fasta	ETFBKMT	chr12	31654688	31678114
ETFBKMT_chr12_31654688_31678114	0/0	t0043	5345	1	0	1	0	0	0	copy fasta	ETFBKMT	chr12	31654688	31678114
ETFBKMT_chr12_31654688_31678114	0/0	t0044	5345	1	0	0	0	1	0	copy fasta	ETFBKMT	chr12	31654688	31678114
ETFBKMT_chr12_31654688_31678114	0/0	t0045	5345	1	0	1	0	0	0	copy fasta	ETFBKMT	chr12	31654688	31678114
ETFBKMT_chr12_31654688_31678114	0/0	t0046	5340	1	0	0	0	0	1	copy fasta	ETFBKMT	chr12	31654688	31678114
ETFBKMT_chr12_31654688_31678114	0/0	t0047	5340	1	0	0	0	0	1	copy fasta	ETFBKMT	chr12	31654688	31678114
ETFBKMT_chr12_31654688_31678114	0/0	t0048	5339	1	1	0	0	0	0	copy fasta	ETFBKMT	chr12	31654688	31678114
ETFBKMT_chr12_31654688_31678114	0/0	t0049	5341	1	0	0	1	0	0	copy fasta	ETFBKMT	chr12	31654688	31678114
ETFBKMT_chr12_31654688_31678114	0/0	t0050	5341	1	0	0	0	0	1	copy fasta	ETFBKMT	chr12	31654688	31678114
ETFBKMT_chr12_31654688_31678114	0/0	t0051	5340	1	1	0	0	0	0	copy fasta	ETFBKMT	chr12	31654688	31678114
ETFBKMT_chr12_31654688_31678114	0/0	t0052	5341	1	0	0	0	1	0	copy fasta	ETFBKMT	chr12	31654688	31678114
ETFBKMT_chr12_31654688_31678114	0/0	t0053	5341	1	1	0	0	0	0	copy fasta	ETFBKMT	chr12	31654688	31678114
ETFBKMT_chr12_31654688_31678114	0/0	t0054	5341	1	0	0	1	0	0	copy fasta	ETFBKMT	chr12	31654688	31678114
ETFBKMT_chr12_31654688_31678114	0/0	t0055	5341	1	0	1	0	0	0	copy fasta	ETFBKMT	chr12	31654688	31678114
ETFBKMT_chr12_31654688_31678114	0/0	t0056	5341	1	1	0	0	0	0	copy fasta	ETFBKMT	chr12	31654688	31678114
ETFBKMT_chr12_31654688_31678114	0/0	t0057	5341	1	0	1	0	0	0	copy fasta	ETFBKMT	chr12	31654688	31678114
ETFBKMT_chr12_31654688_31678114	0/0	t0058	5342	1	1	0	0	0	0	copy fasta	ETFBKMT	chr12	31654688	31678114
ETFBKMT_chr12_31654688_31678114	0/0	t0059	5340	1	0	0	1	0	0	copy fasta	ETFBKMT	chr12	31654688	31678114
ETFBKMT_chr12_31654688_31678114	0/0	t0060	5340	1	0	0	1	0	0	copy fasta	ETFBKMT	chr12	31654688	31678114
ETFBKMT_chr12_31654688_31678114	0/0	t0061	5340	1	0	1	0	0	0	copy fasta	ETFBKMT	chr12	31654688	31678114
ETFBKMT_chr12_31654688_31678114	0/0	t0062	5340	1	0	0	0	0	1	copy fasta	ETFBKMT	chr12	31654688	31678114
ETFBKMT_chr12_31654688_31678114	0/0	t0063	5341	1	0	0	1	0	0	copy fasta	ETFBKMT	chr12	31654688	31678114
ETFBKMT_chr12_31654688_31678114	0/0	t0064	5340	1	0	1	0	0	0	copy fasta	ETFBKMT	chr12	31654688	31678114
ETFBKMT_chr12_31654688_31678114	0/0	t0065	5337	1	1	0	0	0	0	copy fasta	ETFBKMT	chr12	31654688	31678114
ETFBKMT_chr12_31654688_31678114	0/0	t0066	5337	1	1	0	0	0	0	copy fasta	ETFBKMT	chr12	31654688	31678114
ETFB_chr19_51340169_51371388	1/1	t0001	105	436	94	82	200	18	40	copy fasta	ETFB	chr19	51340169	51371388
ETFDH_chr4_158667296_158714623	0/0	t0001	1240	130	7	43	55	10	15	copy fasta	ETFDH	chr4	158667296	158714623
ETFDH_chr4_158667296_158714623	1/0	t0002	1258	22	18	3	0	0	0	copy fasta	ETFDH	chr4	158667296	158714623
ETFDH_chr4_158667296_158714623	0/1	t0003	1266	21	1	2	11	1	5	copy fasta	ETFDH	chr4	158667296	158714623
ETFDH_chr4_158667296_158714623	0/0	t0004	1262	12	11	1	0	0	0	copy fasta	ETFDH	chr4	158667296	158714623
ETFDH_chr4_158667296_158714623	0/0	t0005	1264	11	10	0	0	0	1	copy fasta	ETFDH	chr4	158667296	158714623
ETFDH_chr4_158667296_158714623	0/0	t0006	1260	11	9	0	0	0	2	copy fasta	ETFDH	chr4	158667296	158714623
ETFDH_chr4_158667296_158714623	0/0	t0007	1264	11	0	2	6	1	2	copy fasta	ETFDH	chr4	158667296	158714623
ETFDH_chr4_158667296_158714623	0/0	t0008	1260	10	0	0	8	0	2	copy fasta	ETFDH	chr4	158667296	158714623
ETFDH_chr4_158667296_158714623	0/0	t0009	1266	10	6	0	0	0	4	copy fasta	ETFDH	chr4	158667296	158714623
ETFDH_chr4_158667296_158714623	0/0	t0010	1268	8	7	0	1	0	0	copy fasta	ETFDH	chr4	158667296	158714623
ETFDH_chr4_158667296_158714623	0/0	t0011	1268	8	0	0	6	0	2	copy fasta	ETFDH	chr4	158667296	158714623
ETFDH_chr4_158667296_158714623	0/0	t0012	1260	6	6	0	0	0	0	copy fasta	ETFDH	chr4	158667296	158714623
ETFDH_chr4_158667296_158714623	0/0	t0013	1270	5	1	0	3	0	1	copy fasta	ETFDH	chr4	158667296	158714623
ETFDH_chr4_158667296_158714623	0/0	t0014	1240	3	0	0	3	0	0	copy fasta	ETFDH	chr4	158667296	158714623
ETFDH_chr4_158667296_158714623	0/0	t0015	1270	3	3	0	0	0	0	copy fasta	ETFDH	chr4	158667296	158714623
ETFDH_chr4_158667296_158714623	0/0	t0016	1272	3	0	0	1	1	1	copy fasta	ETFDH	chr4	158667296	158714623
ETFDH_chr4_158667296_158714623	0/0	t0017	1267	2	1	0	0	0	1	copy fasta	ETFDH	chr4	158667296	158714623
ETFDH_chr4_158667296_158714623	0/0	t0018	1258	2	1	0	1	0	0	copy fasta	ETFDH	chr4	158667296	158714623
ETFDH_chr4_158667296_158714623	0/0	t0019	1262	2	1	0	0	0	1	copy fasta	ETFDH	chr4	158667296	158714623
ETFDH_chr4_158667296_158714623	0/0	t0020	1262	1	0	0	1	0	0	copy fasta	ETFDH	chr4	158667296	158714623
ETFDH_chr4_158667296_158714623	0/0	t0021	1240	1	0	0	1	0	0	copy fasta	ETFDH	chr4	158667296	158714623
ETFDH_chr4_158667296_158714623	0/0	t0022	1240	1	0	1	0	0	0	copy fasta	ETFDH	chr4	158667296	158714623