JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
ETFDH_chr4_158667296_158714623	0/0	t0023	1269	1	1	0	0	0	0	copy fasta	ETFDH	chr4	158667296	158714623
ETFDH_chr4_158667296_158714623	0/0	t0024	1242	1	0	0	0	1	0	copy fasta	ETFDH	chr4	158667296	158714623
ETFDH_chr4_158667296_158714623	0/0	t0025	1244	1	1	0	0	0	0	copy fasta	ETFDH	chr4	158667296	158714623
ETFDH_chr4_158667296_158714623	0/0	t0026	1262	1	0	1	0	0	0	copy fasta	ETFDH	chr4	158667296	158714623
ETFDH_chr4_158667296_158714623	0/0	t0027	1262	1	1	0	0	0	0	copy fasta	ETFDH	chr4	158667296	158714623
ETFDH_chr4_158667296_158714623	0/0	t0028	1272	1	1	0	0	0	0	copy fasta	ETFDH	chr4	158667296	158714623
ETFDH_chr4_158667296_158714623	0/0	t0029	1258	1	1	0	0	0	0	copy fasta	ETFDH	chr4	158667296	158714623
ETFDH_chr4_158667296_158714623	0/0	t0030	1258	1	1	0	0	0	0	copy fasta	ETFDH	chr4	158667296	158714623
ETFDH_chr4_158667296_158714623	0/0	t0031	1266	1	0	0	0	0	1	copy fasta	ETFDH	chr4	158667296	158714623
ETFDH_chr4_158667296_158714623	0/0	t0032	1268	1	0	0	0	0	1	copy fasta	ETFDH	chr4	158667296	158714623
ETFDH_chr4_158667296_158714623	0/0	t0033	1267	1	0	1	0	0	0	copy fasta	ETFDH	chr4	158667296	158714623
ETFDH_chr4_158667296_158714623	0/0	t0034	1269	1	0	0	1	0	0	copy fasta	ETFDH	chr4	158667296	158714623
ETFDH_chr4_158667296_158714623	0/0	t0035	1275	1	1	0	0	0	0	copy fasta	ETFDH	chr4	158667296	158714623
ETFDH_chr4_158667296_158714623	0/0	t0036	1274	1	0	0	0	0	1	copy fasta	ETFDH	chr4	158667296	158714623
ETFDH_chr4_158667296_158714623	0/0	t0037	1278	1	1	0	0	0	0	copy fasta	ETFDH	chr4	158667296	158714623
ETFRF1_chr12_25190237_25210143	0/1	t0001	967	216	18	34	122	7	34	copy fasta	ETFRF1	chr12	25190237	25210143
ETFRF1_chr12_25190237_25210143	1/0	t0002	970	132	53	35	37	0	6	copy fasta	ETFRF1	chr12	25190237	25210143
ETFRF1_chr12_25190237_25210143	0/0	t0003	970	16	0	7	1	5	3	copy fasta	ETFRF1	chr12	25190237	25210143
ETFRF1_chr12_25190237_25210143	0/0	t0004	970	10	10	0	0	0	0	copy fasta	ETFRF1	chr12	25190237	25210143
ETFRF1_chr12_25190237_25210143	0/0	t0005	968	7	7	0	0	0	0	copy fasta	ETFRF1	chr12	25190237	25210143
ETFRF1_chr12_25190237_25210143	0/0	t0006	970	5	3	2	0	0	0	copy fasta	ETFRF1	chr12	25190237	25210143
ETFRF1_chr12_25190237_25210143	0/0	t0007	970	2	2	0	0	0	0	copy fasta	ETFRF1	chr12	25190237	25210143
ETFRF1_chr12_25190237_25210143	0/0	t0008	967	1	0	0	0	0	1	copy fasta	ETFRF1	chr12	25190237	25210143
ETFRF1_chr12_25190237_25210143	0/0	t0009	968	1	1	0	0	0	0	copy fasta	ETFRF1	chr12	25190237	25210143
ETHE1_chr19_43501719_43532201	1/1	t0001	156	406	94	78	171	14	47	copy fasta	ETHE1	chr19	43501719	43532201
ETHE1_chr19_43501719_43532201	0/0	t0002	156	1	0	0	0	0	1	copy fasta	ETHE1	chr19	43501719	43532201
ETHE1_chr19_43501719_43532201	0/0	t0003	156	1	0	0	1	0	0	copy fasta	ETHE1	chr19	43501719	43532201
ETNK1_chr12_22620171_22695665	0/0	t0001	5972	51	2	4	37	1	7	copy fasta	ETNK1	chr12	22620171	22695665
ETNK1_chr12_22620171_22695665	1/0	t0002	5972	50	18	15	4	4	8	copy fasta	ETNK1	chr12	22620171	22695665
ETNK1_chr12_22620171_22695665	0/1	t0003	5970	41	5	15	15	1	4	copy fasta	ETNK1	chr12	22620171	22695665
ETNK1_chr12_22620171_22695665	0/0	t0004	5971	19	0	5	6	1	7	copy fasta	ETNK1	chr12	22620171	22695665
ETNK1_chr12_22620171_22695665	0/0	t0005	5973	15	1	2	11	0	1	copy fasta	ETNK1	chr12	22620171	22695665
ETNK1_chr12_22620171_22695665	0/0	t0006	5972	11	0	0	10	1	0	copy fasta	ETNK1	chr12	22620171	22695665
ETNK1_chr12_22620171_22695665	0/0	t0007	5973	10	7	0	2	0	1	copy fasta	ETNK1	chr12	22620171	22695665
ETNK1_chr12_22620171_22695665	0/0	t0008	5972	9	0	0	9	0	0	copy fasta	ETNK1	chr12	22620171	22695665
ETNK1_chr12_22620171_22695665	0/0	t0009	5970	8	8	0	0	0	0	copy fasta	ETNK1	chr12	22620171	22695665
ETNK1_chr12_22620171_22695665	0/0	t0010	5971	7	0	4	1	0	2	copy fasta	ETNK1	chr12	22620171	22695665
ETNK1_chr12_22620171_22695665	0/0	t0011	5974	7	5	1	1	0	0	copy fasta	ETNK1	chr12	22620171	22695665
ETNK1_chr12_22620171_22695665	0/0	t0012	5975	7	6	1	0	0	0	copy fasta	ETNK1	chr12	22620171	22695665
ETNK1_chr12_22620171_22695665	0/0	t0013	5973	6	4	0	2	0	0	copy fasta	ETNK1	chr12	22620171	22695665
ETNK1_chr12_22620171_22695665	0/0	t0014	5971	6	6	0	0	0	0	copy fasta	ETNK1	chr12	22620171	22695665
ETNK1_chr12_22620171_22695665	0/0	t0015	5971	4	0	0	4	0	0	copy fasta	ETNK1	chr12	22620171	22695665
ETNK1_chr12_22620171_22695665	0/0	t0016	5971	4	0	0	4	0	0	copy fasta	ETNK1	chr12	22620171	22695665
ETNK1_chr12_22620171_22695665	0/0	t0017	5973	3	3	0	0	0	0	copy fasta	ETNK1	chr12	22620171	22695665
ETNK1_chr12_22620171_22695665	0/0	t0018	5971	3	1	2	0	0	0	copy fasta	ETNK1	chr12	22620171	22695665
ETNK1_chr12_22620171_22695665	0/0	t0019	5971	3	2	0	0	0	1	copy fasta	ETNK1	chr12	22620171	22695665
ETNK1_chr12_22620171_22695665	0/0	t0020	5972	3	3	0	0	0	0	copy fasta	ETNK1	chr12	22620171	22695665
ETNK1_chr12_22620171_22695665	0/0	t0021	5972	3	0	0	3	0	0	copy fasta	ETNK1	chr12	22620171	22695665
ETNK1_chr12_22620171_22695665	0/0	t0022	5972	3	3	0	0	0	0	copy fasta	ETNK1	chr12	22620171	22695665
ETNK1_chr12_22620171_22695665	0/0	t0023	5968	2	1	1	0	0	0	copy fasta	ETNK1	chr12	22620171	22695665