JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
ETNK1_chr12_22620171_22695665	0/0	t0024	5972	2	0	0	2	0	0	copy fasta	ETNK1	chr12	22620171	22695665
ETNK1_chr12_22620171_22695665	0/0	t0025	5971	2	2	0	0	0	0	copy fasta	ETNK1	chr12	22620171	22695665
ETNK1_chr12_22620171_22695665	0/0	t0026	5974	2	0	0	2	0	0	copy fasta	ETNK1	chr12	22620171	22695665
ETNK1_chr12_22620171_22695665	0/0	t0027	5972	2	2	0	0	0	0	copy fasta	ETNK1	chr12	22620171	22695665
ETNK1_chr12_22620171_22695665	0/0	t0028	5972	2	2	0	0	0	0	copy fasta	ETNK1	chr12	22620171	22695665
ETNK1_chr12_22620171_22695665	0/0	t0029	5971	2	2	0	0	0	0	copy fasta	ETNK1	chr12	22620171	22695665
ETNK1_chr12_22620171_22695665	0/0	t0030	5972	2	0	0	2	0	0	copy fasta	ETNK1	chr12	22620171	22695665
ETNK1_chr12_22620171_22695665	0/0	t0031	5973	2	0	0	2	0	0	copy fasta	ETNK1	chr12	22620171	22695665
ETNK1_chr12_22620171_22695665	0/0	t0032	5972	1	1	0	0	0	0	copy fasta	ETNK1	chr12	22620171	22695665
ETNK1_chr12_22620171_22695665	0/0	t0033	5969	1	1	0	0	0	0	copy fasta	ETNK1	chr12	22620171	22695665
ETNK1_chr12_22620171_22695665	0/0	t0034	5974	1	1	0	0	0	0	copy fasta	ETNK1	chr12	22620171	22695665
ETNK1_chr12_22620171_22695665	0/0	t0035	5972	1	0	1	0	0	0	copy fasta	ETNK1	chr12	22620171	22695665
ETNK1_chr12_22620171_22695665	0/0	t0036	5972	1	0	1	0	0	0	copy fasta	ETNK1	chr12	22620171	22695665
ETNK1_chr12_22620171_22695665	0/0	t0037	5972	1	0	0	1	0	0	copy fasta	ETNK1	chr12	22620171	22695665
ETNK1_chr12_22620171_22695665	0/0	t0038	5972	1	1	0	0	0	0	copy fasta	ETNK1	chr12	22620171	22695665
ETNK1_chr12_22620171_22695665	0/0	t0039	5972	1	0	0	1	0	0	copy fasta	ETNK1	chr12	22620171	22695665
ETNK1_chr12_22620171_22695665	0/0	t0040	5972	1	1	0	0	0	0	copy fasta	ETNK1	chr12	22620171	22695665
ETNK1_chr12_22620171_22695665	0/0	t0041	5972	1	1	0	0	0	0	copy fasta	ETNK1	chr12	22620171	22695665
ETNK1_chr12_22620171_22695665	0/0	t0042	5972	1	0	1	0	0	0	copy fasta	ETNK1	chr12	22620171	22695665
ETNK1_chr12_22620171_22695665	0/0	t0043	5972	1	1	0	0	0	0	copy fasta	ETNK1	chr12	22620171	22695665
ETNK1_chr12_22620171_22695665	0/0	t0044	5972	1	0	1	0	0	0	copy fasta	ETNK1	chr12	22620171	22695665
ETNK1_chr12_22620171_22695665	0/0	t0045	5972	1	1	0	0	0	0	copy fasta	ETNK1	chr12	22620171	22695665
ETNK1_chr12_22620171_22695665	0/0	t0046	5972	1	0	0	1	0	0	copy fasta	ETNK1	chr12	22620171	22695665
ETNK1_chr12_22620171_22695665	0/0	t0047	5973	1	1	0	0	0	0	copy fasta	ETNK1	chr12	22620171	22695665
ETNK1_chr12_22620171_22695665	0/0	t0048	5973	1	0	1	0	0	0	copy fasta	ETNK1	chr12	22620171	22695665
ETNK1_chr12_22620171_22695665	0/0	t0049	5973	1	0	0	0	0	1	copy fasta	ETNK1	chr12	22620171	22695665
ETNK1_chr12_22620171_22695665	0/0	t0050	5973	1	0	1	0	0	0	copy fasta	ETNK1	chr12	22620171	22695665
ETNK1_chr12_22620171_22695665	0/0	t0051	5973	1	0	1	0	0	0	copy fasta	ETNK1	chr12	22620171	22695665
ETNK1_chr12_22620171_22695665	0/0	t0052	5975	1	1	0	0	0	0	copy fasta	ETNK1	chr12	22620171	22695665
ETNK1_chr12_22620171_22695665	0/0	t0053	5972	1	0	1	0	0	0	copy fasta	ETNK1	chr12	22620171	22695665
ETNK1_chr12_22620171_22695665	0/0	t0054	5974	1	1	0	0	0	0	copy fasta	ETNK1	chr12	22620171	22695665
ETNK1_chr12_22620171_22695665	0/0	t0055	5971	1	1	0	0	0	0	copy fasta	ETNK1	chr12	22620171	22695665
ETNK1_chr12_22620171_22695665	0/0	t0056	5972	1	1	0	0	0	0	copy fasta	ETNK1	chr12	22620171	22695665
ETNK1_chr12_22620171_22695665	0/0	t0057	5972	1	0	0	0	0	1	copy fasta	ETNK1	chr12	22620171	22695665
ETNK1_chr12_22620171_22695665	0/0	t0058	5972	1	0	0	0	0	1	copy fasta	ETNK1	chr12	22620171	22695665
ETNK2_chr1_204126062_204157044	1/1	t0001	1315	374	80	61	177	14	40	copy fasta	ETNK2	chr1	204126062	204157044
ETNK2_chr1_204126062_204157044	0/0	t0002	1315	26	0	6	20	0	0	copy fasta	ETNK2	chr1	204126062	204157044
ETNK2_chr1_204126062_204157044	0/0	t0003	1315	6	6	0	0	0	0	copy fasta	ETNK2	chr1	204126062	204157044
ETNK2_chr1_204126062_204157044	0/0	t0004	1315	5	5	0	0	0	0	copy fasta	ETNK2	chr1	204126062	204157044
ETNK2_chr1_204126062_204157044	0/0	t0005	1315	3	3	0	0	0	0	copy fasta	ETNK2	chr1	204126062	204157044
ETNK2_chr1_204126062_204157044	0/0	t0006	1315	2	0	0	2	0	0	copy fasta	ETNK2	chr1	204126062	204157044
ETNK2_chr1_204126062_204157044	0/0	t0007	1315	1	1	0	0	0	0	copy fasta	ETNK2	chr1	204126062	204157044
ETNK2_chr1_204126062_204157044	0/0	t0008	1315	1	0	0	1	0	0	copy fasta	ETNK2	chr1	204126062	204157044
ETNK2_chr1_204126062_204157044	0/0	t0009	1315	1	0	0	0	0	1	copy fasta	ETNK2	chr1	204126062	204157044
ETNK2_chr1_204126062_204157044	0/0	t0010	1315	1	0	0	0	0	1	copy fasta	ETNK2	chr1	204126062	204157044
ETNK2_chr1_204126062_204157044	0/0	t0011	1315	1	0	1	0	0	0	copy fasta	ETNK2	chr1	204126062	204157044
ETNK2_chr1_204126062_204157044	0/0	t0012	1315	1	1	0	0	0	0	copy fasta	ETNK2	chr1	204126062	204157044
ETNPPL_chr4_108737053_108768053	1/1	t0001	587	256	73	61	77	14	29	copy fasta	ETNPPL	chr4	108737053	108768053
ETNPPL_chr4_108737053_108768053	0/0	t0002	587	114	8	7	86	0	13	copy fasta	ETNPPL	chr4	108737053	108768053
ETNPPL_chr4_108737053_108768053	0/0	t0003	587	3	0	3	0	0	0	copy fasta	ETNPPL	chr4	108737053	108768053