JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
ETNPPL_chr4_108737053_108768053	0/0	t0004	587	1	1	0	0	0	0	copy fasta	ETNPPL	chr4	108737053	108768053
ETNPPL_chr4_108737053_108768053	0/0	t0005	587	1	1	0	0	0	0	copy fasta	ETNPPL	chr4	108737053	108768053
ETNPPL_chr4_108737053_108768053	0/0	t0006	587	1	0	0	1	0	0	copy fasta	ETNPPL	chr4	108737053	108768053
ETNPPL_chr4_108737053_108768053	0/0	t0007	587	1	1	0	0	0	0	copy fasta	ETNPPL	chr4	108737053	108768053
ETNPPL_chr4_108737053_108768053	0/0	t0008	587	1	0	1	0	0	0	copy fasta	ETNPPL	chr4	108737053	108768053
ETS1_chr11_128453765_128592558	0/0	t0001	3676	71	12	12	36	1	10	copy fasta	ETS1	chr11	128453765	128592558
ETS1_chr11_128453765_128592558	0/0	t0002	3676	35	1	10	16	4	4	copy fasta	ETS1	chr11	128453765	128592558
ETS1_chr11_128453765_128592558	0/0	t0003	3686	34	2	5	23	1	3	copy fasta	ETS1	chr11	128453765	128592558
ETS1_chr11_128453765_128592558	0/0	t0004	3680	31	25	1	0	2	3	copy fasta	ETS1	chr11	128453765	128592558
ETS1_chr11_128453765_128592558	0/1	t0005	3686	22	1	13	1	2	4	copy fasta	ETS1	chr11	128453765	128592558
ETS1_chr11_128453765_128592558	0/0	t0006	3682	22	7	10	1	1	3	copy fasta	ETS1	chr11	128453765	128592558
ETS1_chr11_128453765_128592558	0/0	t0007	3682	7	6	1	0	0	0	copy fasta	ETS1	chr11	128453765	128592558
ETS1_chr11_128453765_128592558	0/0	t0008	3684	5	4	1	0	0	0	copy fasta	ETS1	chr11	128453765	128592558
ETS1_chr11_128453765_128592558	0/0	t0009	3672	5	4	1	0	0	0	copy fasta	ETS1	chr11	128453765	128592558
ETS1_chr11_128453765_128592558	0/0	t0010	3681	4	4	0	0	0	0	copy fasta	ETS1	chr11	128453765	128592558
ETS1_chr11_128453765_128592558	0/0	t0011	3682	4	0	1	3	0	0	copy fasta	ETS1	chr11	128453765	128592558
ETS1_chr11_128453765_128592558	0/0	t0012	3684	4	1	0	2	0	1	copy fasta	ETS1	chr11	128453765	128592558
ETS1_chr11_128453765_128592558	0/0	t0013	3678	4	0	1	3	0	0	copy fasta	ETS1	chr11	128453765	128592558
ETS1_chr11_128453765_128592558	0/0	t0014	3674	4	2	1	1	0	0	copy fasta	ETS1	chr11	128453765	128592558
ETS1_chr11_128453765_128592558	0/0	t0015	3682	3	3	0	0	0	0	copy fasta	ETS1	chr11	128453765	128592558
ETS1_chr11_128453765_128592558	1/0	t0016	3682	3	0	2	0	0	0	copy fasta	ETS1	chr11	128453765	128592558
ETS1_chr11_128453765_128592558	0/0	t0017	3685	3	0	1	2	0	0	copy fasta	ETS1	chr11	128453765	128592558
ETS1_chr11_128453765_128592558	0/0	t0018	3682	2	2	0	0	0	0	copy fasta	ETS1	chr11	128453765	128592558
ETS1_chr11_128453765_128592558	0/0	t0019	3680	2	2	0	0	0	0	copy fasta	ETS1	chr11	128453765	128592558
ETS1_chr11_128453765_128592558	0/0	t0020	3684	2	1	0	0	0	1	copy fasta	ETS1	chr11	128453765	128592558
ETS1_chr11_128453765_128592558	0/0	t0021	3682	2	0	1	0	1	0	copy fasta	ETS1	chr11	128453765	128592558
ETS1_chr11_128453765_128592558	0/0	t0022	3682	2	0	0	0	0	2	copy fasta	ETS1	chr11	128453765	128592558
ETS1_chr11_128453765_128592558	0/0	t0023	3681	2	2	0	0	0	0	copy fasta	ETS1	chr11	128453765	128592558
ETS1_chr11_128453765_128592558	0/0	t0024	3676	1	1	0	0	0	0	copy fasta	ETS1	chr11	128453765	128592558
ETS1_chr11_128453765_128592558	0/0	t0025	3686	1	1	0	0	0	0	copy fasta	ETS1	chr11	128453765	128592558
ETS1_chr11_128453765_128592558	0/0	t0026	3686	1	1	0	0	0	0	copy fasta	ETS1	chr11	128453765	128592558
ETS1_chr11_128453765_128592558	0/0	t0027	3682	1	1	0	0	0	0	copy fasta	ETS1	chr11	128453765	128592558
ETS1_chr11_128453765_128592558	0/0	t0028	3682	1	1	0	0	0	0	copy fasta	ETS1	chr11	128453765	128592558
ETS1_chr11_128453765_128592558	0/0	t0029	3686	1	0	0	0	0	1	copy fasta	ETS1	chr11	128453765	128592558
ETS1_chr11_128453765_128592558	0/0	t0030	3685	1	0	0	1	0	0	copy fasta	ETS1	chr11	128453765	128592558
ETS1_chr11_128453765_128592558	0/0	t0031	3683	1	0	0	1	0	0	copy fasta	ETS1	chr11	128453765	128592558
ETS1_chr11_128453765_128592558	0/0	t0032	3675	1	0	0	1	0	0	copy fasta	ETS1	chr11	128453765	128592558
ETS1_chr11_128453765_128592558	0/0	t0033	3676	1	0	1	0	0	0	copy fasta	ETS1	chr11	128453765	128592558
ETS1_chr11_128453765_128592558	0/0	t0034	3674	1	0	0	1	0	0	copy fasta	ETS1	chr11	128453765	128592558
ETS1_chr11_128453765_128592558	0/0	t0035	3686	1	0	0	1	0	0	copy fasta	ETS1	chr11	128453765	128592558
ETS1_chr11_128453765_128592558	0/0	t0036	3676	1	0	0	1	0	0	copy fasta	ETS1	chr11	128453765	128592558
ETS2_chr21_38800929_38829955	0/0	t0001	2259	180	23	36	99	2	20	copy fasta	ETS2	chr21	38800929	38829955
ETS2_chr21_38800929_38829955	0/0	t0002	2263	96	13	13	49	5	16	copy fasta	ETS2	chr21	38800929	38829955
ETS2_chr21_38800929_38829955	1/1	t0003	2259	61	11	17	19	8	4	copy fasta	ETS2	chr21	38800929	38829955
ETS2_chr21_38800929_38829955	0/0	t0004	2259	39	10	7	18	3	1	copy fasta	ETS2	chr21	38800929	38829955
ETS2_chr21_38800929_38829955	0/0	t0005	2259	12	12	0	0	0	0	copy fasta	ETS2	chr21	38800929	38829955
ETS2_chr21_38800929_38829955	0/0	t0006	2263	7	5	2	0	0	0	copy fasta	ETS2	chr21	38800929	38829955
ETS2_chr21_38800929_38829955	0/0	t0007	2259	5	5	0	0	0	0	copy fasta	ETS2	chr21	38800929	38829955
ETS2_chr21_38800929_38829955	0/0	t0008	2259	3	3	0	0	0	0	copy fasta	ETS2	chr21	38800929	38829955
ETS2_chr21_38800929_38829955	0/0	t0009	2263	2	2	0	0	0	0	copy fasta	ETS2	chr21	38800929	38829955