JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
ETS2_chr21_38800929_38829955	0/0	t0010	2263	2	1	1	0	0	0	copy fasta	ETS2	chr21	38800929	38829955
ETS2_chr21_38800929_38829955	0/0	t0011	2263	2	2	0	0	0	0	copy fasta	ETS2	chr21	38800929	38829955
ETS2_chr21_38800929_38829955	0/0	t0012	2263	2	2	0	0	0	0	copy fasta	ETS2	chr21	38800929	38829955
ETS2_chr21_38800929_38829955	0/0	t0013	2259	1	0	0	1	0	0	copy fasta	ETS2	chr21	38800929	38829955
ETS2_chr21_38800929_38829955	0/0	t0014	2263	1	0	0	1	0	0	copy fasta	ETS2	chr21	38800929	38829955
ETS2_chr21_38800929_38829955	0/0	t0015	2259	1	0	0	1	0	0	copy fasta	ETS2	chr21	38800929	38829955
ETS2_chr21_38800929_38829955	0/0	t0016	2260	1	1	0	0	0	0	copy fasta	ETS2	chr21	38800929	38829955
ETS2_chr21_38800929_38829955	0/0	t0017	2260	1	0	1	0	0	0	copy fasta	ETS2	chr21	38800929	38829955
ETS2_chr21_38800929_38829955	0/0	t0018	2259	1	1	0	0	0	0	copy fasta	ETS2	chr21	38800929	38829955
ETS2_chr21_38800929_38829955	0/0	t0019	2259	1	1	0	0	0	0	copy fasta	ETS2	chr21	38800929	38829955
ETS2_chr21_38800929_38829955	0/0	t0020	2259	1	1	0	0	0	0	copy fasta	ETS2	chr21	38800929	38829955
ETS2_chr21_38800929_38829955	0/0	t0021	2259	1	1	0	0	0	0	copy fasta	ETS2	chr21	38800929	38829955
ETS2_chr21_38800929_38829955	0/0	t0022	2263	1	1	0	0	0	0	copy fasta	ETS2	chr21	38800929	38829955
ETS2_chr21_38800929_38829955	0/0	t0023	2263	1	0	1	0	0	0	copy fasta	ETS2	chr21	38800929	38829955
ETS2_chr21_38800929_38829955	0/0	t0024	2260	1	1	0	0	0	0	copy fasta	ETS2	chr21	38800929	38829955
ETS2_chr21_38800929_38829955	0/0	t0025	2259	1	1	0	0	0	0	copy fasta	ETS2	chr21	38800929	38829955
ETS2_chr21_38800929_38829955	0/0	t0026	2263	1	1	0	0	0	0	copy fasta	ETS2	chr21	38800929	38829955
ETS2_chr21_38800929_38829955	0/0	t0027	2259	1	0	0	0	0	1	copy fasta	ETS2	chr21	38800929	38829955
ETV1_chr7_13886229_13994666	0/0	t0001	5026	39	1	7	15	4	12	copy fasta	ETV1	chr7	13886229	13994666
ETV1_chr7_13886229_13994666	0/0	t0002	5025	30	5	7	17	1	0	copy fasta	ETV1	chr7	13886229	13994666
ETV1_chr7_13886229_13994666	0/0	t0003	5025	29	0	1	24	2	2	copy fasta	ETV1	chr7	13886229	13994666
ETV1_chr7_13886229_13994666	0/0	t0004	5027	27	4	1	14	1	7	copy fasta	ETV1	chr7	13886229	13994666
ETV1_chr7_13886229_13994666	0/0	t0005	5026	22	0	3	14	0	5	copy fasta	ETV1	chr7	13886229	13994666
ETV1_chr7_13886229_13994666	0/0	t0006	5025	19	9	3	7	0	0	copy fasta	ETV1	chr7	13886229	13994666
ETV1_chr7_13886229_13994666	0/0	t0007	5026	17	3	4	8	1	1	copy fasta	ETV1	chr7	13886229	13994666
ETV1_chr7_13886229_13994666	0/0	t0008	5026	11	0	2	9	0	0	copy fasta	ETV1	chr7	13886229	13994666
ETV1_chr7_13886229_13994666	0/0	t0009	5026	11	2	6	0	0	3	copy fasta	ETV1	chr7	13886229	13994666
ETV1_chr7_13886229_13994666	0/0	t0010	5026	10	6	3	0	1	0	copy fasta	ETV1	chr7	13886229	13994666
ETV1_chr7_13886229_13994666	0/0	t0011	5025	10	0	9	0	1	0	copy fasta	ETV1	chr7	13886229	13994666
ETV1_chr7_13886229_13994666	0/0	t0012	5025	8	0	0	8	0	0	copy fasta	ETV1	chr7	13886229	13994666
ETV1_chr7_13886229_13994666	0/0	t0013	5025	7	4	2	0	0	1	copy fasta	ETV1	chr7	13886229	13994666
ETV1_chr7_13886229_13994666	0/0	t0014	5025	5	5	0	0	0	0	copy fasta	ETV1	chr7	13886229	13994666
ETV1_chr7_13886229_13994666	0/0	t0015	5026	5	5	0	0	0	0	copy fasta	ETV1	chr7	13886229	13994666
ETV1_chr7_13886229_13994666	0/0	t0016	5026	5	0	0	5	0	0	copy fasta	ETV1	chr7	13886229	13994666
ETV1_chr7_13886229_13994666	0/0	t0017	5026	4	4	0	0	0	0	copy fasta	ETV1	chr7	13886229	13994666
ETV1_chr7_13886229_13994666	0/0	t0018	5026	3	3	0	0	0	0	copy fasta	ETV1	chr7	13886229	13994666
ETV1_chr7_13886229_13994666	0/1	t0019	5026	3	0	0	0	1	1	copy fasta	ETV1	chr7	13886229	13994666
ETV1_chr7_13886229_13994666	0/0	t0020	5027	3	3	0	0	0	0	copy fasta	ETV1	chr7	13886229	13994666
ETV1_chr7_13886229_13994666	0/0	t0021	5027	3	2	1	0	0	0	copy fasta	ETV1	chr7	13886229	13994666
ETV1_chr7_13886229_13994666	0/0	t0022	5026	2	0	0	0	2	0	copy fasta	ETV1	chr7	13886229	13994666
ETV1_chr7_13886229_13994666	0/0	t0023	5026	2	1	1	0	0	0	copy fasta	ETV1	chr7	13886229	13994666
ETV1_chr7_13886229_13994666	0/0	t0024	5025	2	0	2	0	0	0	copy fasta	ETV1	chr7	13886229	13994666
ETV1_chr7_13886229_13994666	0/0	t0025	5026	2	2	0	0	0	0	copy fasta	ETV1	chr7	13886229	13994666
ETV1_chr7_13886229_13994666	0/0	t0026	5025	2	1	1	0	0	0	copy fasta	ETV1	chr7	13886229	13994666
ETV1_chr7_13886229_13994666	0/0	t0027	5027	2	1	0	0	0	1	copy fasta	ETV1	chr7	13886229	13994666
ETV1_chr7_13886229_13994666	0/0	t0028	5023	2	2	0	0	0	0	copy fasta	ETV1	chr7	13886229	13994666
ETV1_chr7_13886229_13994666	0/0	t0029	5026	2	0	1	0	1	0	copy fasta	ETV1	chr7	13886229	13994666
ETV1_chr7_13886229_13994666	0/0	t0030	5025	1	1	0	0	0	0	copy fasta	ETV1	chr7	13886229	13994666
ETV1_chr7_13886229_13994666	0/0	t0031	5026	1	0	1	0	0	0	copy fasta	ETV1	chr7	13886229	13994666
ETV1_chr7_13886229_13994666	0/0	t0032	5026	1	0	0	0	1	0	copy fasta	ETV1	chr7	13886229	13994666