JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
ETV1_chr7_13886229_13994666	0/0	t0033	5025	1	1	0	0	0	0	copy fasta	ETV1	chr7	13886229	13994666
ETV1_chr7_13886229_13994666	0/0	t0034	5026	1	1	0	0	0	0	copy fasta	ETV1	chr7	13886229	13994666
ETV1_chr7_13886229_13994666	0/0	t0035	5025	1	0	0	0	1	0	copy fasta	ETV1	chr7	13886229	13994666
ETV1_chr7_13886229_13994666	0/0	t0036	5025	1	0	1	0	0	0	copy fasta	ETV1	chr7	13886229	13994666
ETV1_chr7_13886229_13994666	0/0	t0037	5025	1	0	0	1	0	0	copy fasta	ETV1	chr7	13886229	13994666
ETV1_chr7_13886229_13994666	0/0	t0038	5025	1	1	0	0	0	0	copy fasta	ETV1	chr7	13886229	13994666
ETV1_chr7_13886229_13994666	0/0	t0039	5025	1	1	0	0	0	0	copy fasta	ETV1	chr7	13886229	13994666
ETV1_chr7_13886229_13994666	0/0	t0040	5026	1	1	0	0	0	0	copy fasta	ETV1	chr7	13886229	13994666
ETV1_chr7_13886229_13994666	0/0	t0041	5026	1	1	0	0	0	0	copy fasta	ETV1	chr7	13886229	13994666
ETV1_chr7_13886229_13994666	0/0	t0042	5025	1	1	0	0	0	0	copy fasta	ETV1	chr7	13886229	13994666
ETV1_chr7_13886229_13994666	0/0	t0043	5025	1	0	1	0	0	0	copy fasta	ETV1	chr7	13886229	13994666
ETV1_chr7_13886229_13994666	0/0	t0044	5025	1	0	0	0	1	0	copy fasta	ETV1	chr7	13886229	13994666
ETV1_chr7_13886229_13994666	0/0	t0045	5022	1	1	0	0	0	0	copy fasta	ETV1	chr7	13886229	13994666
ETV1_chr7_13886229_13994666	0/0	t0046	5025	1	1	0	0	0	0	copy fasta	ETV1	chr7	13886229	13994666
ETV1_chr7_13886229_13994666	0/0	t0047	5026	1	0	0	1	0	0	copy fasta	ETV1	chr7	13886229	13994666
ETV1_chr7_13886229_13994666	0/0	t0048	5027	1	0	0	1	0	0	copy fasta	ETV1	chr7	13886229	13994666
ETV1_chr7_13886229_13994666	0/0	t0049	5026	1	1	0	0	0	0	copy fasta	ETV1	chr7	13886229	13994666
ETV1_chr7_13886229_13994666	0/0	t0050	5027	1	1	0	0	0	0	copy fasta	ETV1	chr7	13886229	13994666
ETV1_chr7_13886229_13994666	0/0	t0051	5027	1	1	0	0	0	0	copy fasta	ETV1	chr7	13886229	13994666
ETV1_chr7_13886229_13994666	0/0	t0052	5027	1	1	0	0	0	0	copy fasta	ETV1	chr7	13886229	13994666
ETV1_chr7_13886229_13994666	0/0	t0053	5026	1	0	0	1	0	0	copy fasta	ETV1	chr7	13886229	13994666
ETV1_chr7_13886229_13994666	0/0	t0054	5026	1	0	0	1	0	0	copy fasta	ETV1	chr7	13886229	13994666
ETV1_chr7_13886229_13994666	0/0	t0055	5026	1	1	0	0	0	0	copy fasta	ETV1	chr7	13886229	13994666
ETV1_chr7_13886229_13994666	0/0	t0056	5027	1	1	0	0	0	0	copy fasta	ETV1	chr7	13886229	13994666
ETV1_chr7_13886229_13994666	0/0	t0057	5027	1	0	0	1	0	0	copy fasta	ETV1	chr7	13886229	13994666
ETV1_chr7_13886229_13994666	0/0	t0058	5026	1	0	1	0	0	0	copy fasta	ETV1	chr7	13886229	13994666
ETV1_chr7_13886229_13994666	0/0	t0059	5026	1	0	0	0	0	1	copy fasta	ETV1	chr7	13886229	13994666
ETV1_chr7_13886229_13994666	1/0	t0060	5026	1	0	0	0	0	0	copy fasta	ETV1	chr7	13886229	13994666
ETV1_chr7_13886229_13994666	0/0	t0061	5026	1	0	0	1	0	0	copy fasta	ETV1	chr7	13886229	13994666
ETV1_chr7_13886229_13994666	0/0	t0062	5025	1	1	0	0	0	0	copy fasta	ETV1	chr7	13886229	13994666
ETV2_chr19_35636745_35649871	1/0	t0001	459	315	79	59	146	9	21	copy fasta	ETV2	chr19	35636745	35649871
ETV2_chr19_35636745_35649871	0/1	t0002	459	121	16	21	50	6	27	copy fasta	ETV2	chr19	35636745	35649871
ETV2_chr19_35636745_35649871	0/0	t0003	459	1	1	0	0	0	0	copy fasta	ETV2	chr19	35636745	35649871
ETV2_chr19_35636745_35649871	0/0	t0004	459	1	0	0	0	1	0	copy fasta	ETV2	chr19	35636745	35649871
ETV3L_chr1_157087043_157104808	1/1	t0001	892	337	66	64	157	12	36	copy fasta	ETV3L	chr1	157087043	157104808
ETV3L_chr1_157087043_157104808	0/0	t0002	892	82	3	12	53	5	9	copy fasta	ETV3L	chr1	157087043	157104808
ETV3L_chr1_157087043_157104808	0/0	t0003	892	8	8	0	0	0	0	copy fasta	ETV3L	chr1	157087043	157104808
ETV3L_chr1_157087043_157104808	0/0	t0004	892	7	0	3	0	0	4	copy fasta	ETV3L	chr1	157087043	157104808
ETV3L_chr1_157087043_157104808	0/0	t0005	892	7	6	1	0	0	0	copy fasta	ETV3L	chr1	157087043	157104808
ETV3L_chr1_157087043_157104808	0/0	t0006	892	6	2	2	0	1	1	copy fasta	ETV3L	chr1	157087043	157104808
ETV3L_chr1_157087043_157104808	0/0	t0007	892	5	5	0	0	0	0	copy fasta	ETV3L	chr1	157087043	157104808
ETV3L_chr1_157087043_157104808	0/0	t0008	892	3	3	0	0	0	0	copy fasta	ETV3L	chr1	157087043	157104808
ETV3L_chr1_157087043_157104808	0/0	t0009	892	2	0	2	0	0	0	copy fasta	ETV3L	chr1	157087043	157104808
ETV3L_chr1_157087043_157104808	0/0	t0010	892	2	2	0	0	0	0	copy fasta	ETV3L	chr1	157087043	157104808
ETV3L_chr1_157087043_157104808	0/0	t0011	892	1	0	0	1	0	0	copy fasta	ETV3L	chr1	157087043	157104808
ETV3L_chr1_157087043_157104808	0/0	t0012	892	1	0	0	1	0	0	copy fasta	ETV3L	chr1	157087043	157104808
ETV3L_chr1_157087043_157104808	0/0	t0013	892	1	1	0	0	0	0	copy fasta	ETV3L	chr1	157087043	157104808
ETV3L_chr1_157087043_157104808	0/0	t0014	892	1	1	0	0	0	0	copy fasta	ETV3L	chr1	157087043	157104808
ETV3L_chr1_157087043_157104808	0/0	t0015	892	1	1	0	0	0	0	copy fasta	ETV3L	chr1	157087043	157104808
ETV3_chr1_157116191_157143395	0/0	t0001	3743	205	32	42	98	5	28	copy fasta	ETV3	chr1	157116191	157143395