JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
ETV3_chr1_157116191_157143395	0/0	t0002	3742	85	34	8	40	1	2	copy fasta	ETV3	chr1	157116191	157143395
ETV3_chr1_157116191_157143395	0/0	t0003	3741	29	1	7	17	0	4	copy fasta	ETV3	chr1	157116191	157143395
ETV3_chr1_157116191_157143395	0/1	t0004	3741	22	5	4	3	3	6	copy fasta	ETV3	chr1	157116191	157143395
ETV3_chr1_157116191_157143395	1/0	t0005	3744	12	5	0	6	0	0	copy fasta	ETV3	chr1	157116191	157143395
ETV3_chr1_157116191_157143395	0/0	t0006	3741	7	2	2	3	0	0	copy fasta	ETV3	chr1	157116191	157143395
ETV3_chr1_157116191_157143395	0/0	t0007	3743	6	0	5	0	1	0	copy fasta	ETV3	chr1	157116191	157143395
ETV3_chr1_157116191_157143395	0/0	t0008	3743	4	0	1	3	0	0	copy fasta	ETV3	chr1	157116191	157143395
ETV3_chr1_157116191_157143395	0/0	t0009	3743	3	2	1	0	0	0	copy fasta	ETV3	chr1	157116191	157143395
ETV3_chr1_157116191_157143395	0/0	t0010	3740	2	1	1	0	0	0	copy fasta	ETV3	chr1	157116191	157143395
ETV3_chr1_157116191_157143395	0/0	t0011	3742	2	2	0	0	0	0	copy fasta	ETV3	chr1	157116191	157143395
ETV3_chr1_157116191_157143395	0/0	t0012	3742	2	0	0	2	0	0	copy fasta	ETV3	chr1	157116191	157143395
ETV3_chr1_157116191_157143395	0/0	t0013	3743	2	0	0	2	0	0	copy fasta	ETV3	chr1	157116191	157143395
ETV3_chr1_157116191_157143395	0/0	t0014	3740	2	0	1	1	0	0	copy fasta	ETV3	chr1	157116191	157143395
ETV3_chr1_157116191_157143395	0/0	t0015	3743	2	0	0	2	0	0	copy fasta	ETV3	chr1	157116191	157143395
ETV3_chr1_157116191_157143395	0/0	t0016	3743	1	1	0	0	0	0	copy fasta	ETV3	chr1	157116191	157143395
ETV3_chr1_157116191_157143395	0/0	t0017	3743	1	1	0	0	0	0	copy fasta	ETV3	chr1	157116191	157143395
ETV3_chr1_157116191_157143395	0/0	t0018	3741	1	0	0	0	0	1	copy fasta	ETV3	chr1	157116191	157143395
ETV3_chr1_157116191_157143395	0/0	t0019	3741	1	0	0	1	0	0	copy fasta	ETV3	chr1	157116191	157143395
ETV3_chr1_157116191_157143395	0/0	t0020	3742	1	0	0	1	0	0	copy fasta	ETV3	chr1	157116191	157143395
ETV3_chr1_157116191_157143395	0/0	t0021	3742	1	1	0	0	0	0	copy fasta	ETV3	chr1	157116191	157143395
ETV3_chr1_157116191_157143395	0/0	t0022	3742	1	1	0	0	0	0	copy fasta	ETV3	chr1	157116191	157143395
ETV3_chr1_157116191_157143395	0/0	t0023	3743	1	1	0	0	0	0	copy fasta	ETV3	chr1	157116191	157143395
ETV3_chr1_157116191_157143395	0/0	t0024	3743	1	0	0	1	0	0	copy fasta	ETV3	chr1	157116191	157143395
ETV3_chr1_157116191_157143395	0/0	t0025	3743	1	0	0	1	0	0	copy fasta	ETV3	chr1	157116191	157143395
ETV3_chr1_157116191_157143395	0/0	t0026	3743	1	1	0	0	0	0	copy fasta	ETV3	chr1	157116191	157143395
ETV3_chr1_157116191_157143395	0/0	t0027	3743	1	1	0	0	0	0	copy fasta	ETV3	chr1	157116191	157143395
ETV3_chr1_157116191_157143395	0/0	t0028	3744	1	0	0	1	0	0	copy fasta	ETV3	chr1	157116191	157143395
ETV3_chr1_157116191_157143395	0/0	t0029	3744	1	1	0	0	0	0	copy fasta	ETV3	chr1	157116191	157143395
ETV3_chr1_157116191_157143395	0/0	t0030	3743	1	0	1	0	0	0	copy fasta	ETV3	chr1	157116191	157143395
ETV3_chr1_157116191_157143395	0/0	t0031	3741	1	0	0	0	0	1	copy fasta	ETV3	chr1	157116191	157143395
ETV3_chr1_157116191_157143395	0/0	t0032	3741	1	0	0	1	0	0	copy fasta	ETV3	chr1	157116191	157143395
ETV3_chr1_157116191_157143395	0/0	t0033	3741	1	0	0	1	0	0	copy fasta	ETV3	chr1	157116191	157143395
ETV3_chr1_157116191_157143395	0/0	t0034	3742	1	0	1	0	0	0	copy fasta	ETV3	chr1	157116191	157143395
ETV4_chr17_43522846_43551340	1/1	t0001	881	294	77	53	119	8	35	copy fasta	ETV4	chr17	43522846	43551340
ETV4_chr17_43522846_43551340	0/0	t0002	881	101	9	23	52	6	11	copy fasta	ETV4	chr17	43522846	43551340
ETV4_chr17_43522846_43551340	0/0	t0003	881	1	0	0	1	0	0	copy fasta	ETV4	chr17	43522846	43551340
ETV4_chr17_43522846_43551340	0/0	t0004	881	1	1	0	0	0	0	copy fasta	ETV4	chr17	43522846	43551340
ETV4_chr17_43522846_43551340	0/0	t0005	881	1	1	0	0	0	0	copy fasta	ETV4	chr17	43522846	43551340
ETV5_chr3_186041314_186114089	0/0	t0001	2551	66	19	16	23	4	4	copy fasta	ETV5	chr3	186041314	186114089
ETV5_chr3_186041314_186114089	0/1	t0002	2550	65	10	6	45	0	3	copy fasta	ETV5	chr3	186041314	186114089
ETV5_chr3_186041314_186114089	0/0	t0003	2550	35	1	3	26	2	3	copy fasta	ETV5	chr3	186041314	186114089
ETV5_chr3_186041314_186114089	0/0	t0004	2550	25	6	5	7	4	3	copy fasta	ETV5	chr3	186041314	186114089
ETV5_chr3_186041314_186114089	0/0	t0005	2551	21	2	7	11	0	1	copy fasta	ETV5	chr3	186041314	186114089
ETV5_chr3_186041314_186114089	0/0	t0006	2548	19	13	0	3	0	3	copy fasta	ETV5	chr3	186041314	186114089
ETV5_chr3_186041314_186114089	0/0	t0007	2551	13	3	5	1	0	4	copy fasta	ETV5	chr3	186041314	186114089
ETV5_chr3_186041314_186114089	0/0	t0008	2550	12	2	2	5	2	1	copy fasta	ETV5	chr3	186041314	186114089
ETV5_chr3_186041314_186114089	0/0	t0009	2551	11	0	3	8	0	0	copy fasta	ETV5	chr3	186041314	186114089
ETV5_chr3_186041314_186114089	0/0	t0010	2549	8	0	1	7	0	0	copy fasta	ETV5	chr3	186041314	186114089
ETV5_chr3_186041314_186114089	0/0	t0011	2549	6	0	3	3	0	0	copy fasta	ETV5	chr3	186041314	186114089
ETV5_chr3_186041314_186114089	0/0	t0012	2552	5	3	1	0	0	1	copy fasta	ETV5	chr3	186041314	186114089