JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
ETV5_chr3_186041314_186114089	0/0	t0013	2550	5	0	1	4	0	0	copy fasta	ETV5	chr3	186041314	186114089
ETV5_chr3_186041314_186114089	0/0	t0014	2551	4	2	0	2	0	0	copy fasta	ETV5	chr3	186041314	186114089
ETV5_chr3_186041314_186114089	0/0	t0015	2545	4	4	0	0	0	0	copy fasta	ETV5	chr3	186041314	186114089
ETV5_chr3_186041314_186114089	0/0	t0016	2549	4	4	0	0	0	0	copy fasta	ETV5	chr3	186041314	186114089
ETV5_chr3_186041314_186114089	0/0	t0017	2551	3	0	0	3	0	0	copy fasta	ETV5	chr3	186041314	186114089
ETV5_chr3_186041314_186114089	0/0	t0018	2548	3	3	0	0	0	0	copy fasta	ETV5	chr3	186041314	186114089
ETV5_chr3_186041314_186114089	0/0	t0019	2547	3	1	2	0	0	0	copy fasta	ETV5	chr3	186041314	186114089
ETV5_chr3_186041314_186114089	0/0	t0020	2549	3	3	0	0	0	0	copy fasta	ETV5	chr3	186041314	186114089
ETV5_chr3_186041314_186114089	0/0	t0021	2548	2	2	0	0	0	0	copy fasta	ETV5	chr3	186041314	186114089
ETV5_chr3_186041314_186114089	0/0	t0022	2552	2	2	0	0	0	0	copy fasta	ETV5	chr3	186041314	186114089
ETV5_chr3_186041314_186114089	0/0	t0023	2551	1	0	0	1	0	0	copy fasta	ETV5	chr3	186041314	186114089
ETV5_chr3_186041314_186114089	0/0	t0024	2549	1	0	1	0	0	0	copy fasta	ETV5	chr3	186041314	186114089
ETV5_chr3_186041314_186114089	0/0	t0025	2550	1	0	1	0	0	0	copy fasta	ETV5	chr3	186041314	186114089
ETV5_chr3_186041314_186114089	0/0	t0026	2551	1	0	0	0	0	1	copy fasta	ETV5	chr3	186041314	186114089
ETV5_chr3_186041314_186114089	0/0	t0027	2551	1	1	0	0	0	0	copy fasta	ETV5	chr3	186041314	186114089
ETV5_chr3_186041314_186114089	0/0	t0028	2551	1	0	0	0	0	1	copy fasta	ETV5	chr3	186041314	186114089
ETV5_chr3_186041314_186114089	0/0	t0029	2548	1	1	0	0	0	0	copy fasta	ETV5	chr3	186041314	186114089
ETV5_chr3_186041314_186114089	0/0	t0030	2550	1	0	0	1	0	0	copy fasta	ETV5	chr3	186041314	186114089
ETV5_chr3_186041314_186114089	0/0	t0031	2549	1	0	0	1	0	0	copy fasta	ETV5	chr3	186041314	186114089
ETV5_chr3_186041314_186114089	0/0	t0032	2551	1	0	0	1	0	0	copy fasta	ETV5	chr3	186041314	186114089
ETV5_chr3_186041314_186114089	0/0	t0033	2548	1	1	0	0	0	0	copy fasta	ETV5	chr3	186041314	186114089
ETV5_chr3_186041314_186114089	0/0	t0034	2547	1	1	0	0	0	0	copy fasta	ETV5	chr3	186041314	186114089
ETV5_chr3_186041314_186114089	0/0	t0035	2550	1	0	0	1	0	0	copy fasta	ETV5	chr3	186041314	186114089
ETV5_chr3_186041314_186114089	0/0	t0036	2551	1	0	1	0	0	0	copy fasta	ETV5	chr3	186041314	186114089
ETV5_chr3_186041314_186114089	1/0	t0037	2550	1	0	0	0	0	0	copy fasta	ETV5	chr3	186041314	186114089
ETV5_chr3_186041314_186114089	0/0	t0038	2550	1	1	0	0	0	0	copy fasta	ETV5	chr3	186041314	186114089
ETV5_chr3_186041314_186114089	0/0	t0039	2550	1	1	0	0	0	0	copy fasta	ETV5	chr3	186041314	186114089
ETV5_chr3_186041314_186114089	0/0	t0040	2552	1	0	0	1	0	0	copy fasta	ETV5	chr3	186041314	186114089
ETV5_chr3_186041314_186114089	0/0	t0041	2547	1	1	0	0	0	0	copy fasta	ETV5	chr3	186041314	186114089
ETV5_chr3_186041314_186114089	0/0	t0042	2550	1	1	0	0	0	0	copy fasta	ETV5	chr3	186041314	186114089
ETV5_chr3_186041314_186114089	0/0	t0043	2550	1	0	0	0	0	1	copy fasta	ETV5	chr3	186041314	186114089
ETV6_chr12_11644674_11900377	0/0	t0001	4772	17	1	6	8	0	2	copy fasta	ETV6	chr12	11644674	11900377
ETV6_chr12_11644674_11900377	0/0	t0002	4776	16	0	4	10	2	0	copy fasta	ETV6	chr12	11644674	11900377
ETV6_chr12_11644674_11900377	0/0	t0003	4778	15	0	3	8	1	3	copy fasta	ETV6	chr12	11644674	11900377
ETV6_chr12_11644674_11900377	0/0	t0004	4780	11	6	2	3	0	0	copy fasta	ETV6	chr12	11644674	11900377
ETV6_chr12_11644674_11900377	0/0	t0005	4782	7	0	0	6	0	1	copy fasta	ETV6	chr12	11644674	11900377
ETV6_chr12_11644674_11900377	0/0	t0006	4774	7	1	5	1	0	0	copy fasta	ETV6	chr12	11644674	11900377
ETV6_chr12_11644674_11900377	0/0	t0007	4778	7	0	1	5	0	1	copy fasta	ETV6	chr12	11644674	11900377
ETV6_chr12_11644674_11900377	0/0	t0008	4784	6	0	0	4	0	2	copy fasta	ETV6	chr12	11644674	11900377
ETV6_chr12_11644674_11900377	0/0	t0009	4780	5	0	1	4	0	0	copy fasta	ETV6	chr12	11644674	11900377
ETV6_chr12_11644674_11900377	0/0	t0010	4776	5	1	1	2	0	1	copy fasta	ETV6	chr12	11644674	11900377
ETV6_chr12_11644674_11900377	0/0	t0011	4784	5	5	0	0	0	0	copy fasta	ETV6	chr12	11644674	11900377
ETV6_chr12_11644674_11900377	1/0	t0012	4786	5	3	1	0	0	0	copy fasta	ETV6	chr12	11644674	11900377
ETV6_chr12_11644674_11900377	0/0	t0013	4778	4	4	0	0	0	0	copy fasta	ETV6	chr12	11644674	11900377
ETV6_chr12_11644674_11900377	0/0	t0014	4764	4	4	0	0	0	0	copy fasta	ETV6	chr12	11644674	11900377
ETV6_chr12_11644674_11900377	0/0	t0015	4784	4	0	0	4	0	0	copy fasta	ETV6	chr12	11644674	11900377
ETV6_chr12_11644674_11900377	0/0	t0016	4776	3	0	0	3	0	0	copy fasta	ETV6	chr12	11644674	11900377
ETV6_chr12_11644674_11900377	0/0	t0017	4782	3	0	1	1	1	0	copy fasta	ETV6	chr12	11644674	11900377
ETV6_chr12_11644674_11900377	0/0	t0018	4788	3	3	0	0	0	0	copy fasta	ETV6	chr12	11644674	11900377
ETV6_chr12_11644674_11900377	0/0	t0019	4792	3	0	0	0	2	1	copy fasta	ETV6	chr12	11644674	11900377