Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
AIF1L_chr9_131091531_131128144	0/0	t0026	2924	1	1	0	0	0	0	copy fasta	AIF1L	chr9	131091531	131128144
AIF1L_chr9_131091531_131128144	0/0	t0027	2923	1	0	1	0	0	0	copy fasta	AIF1L	chr9	131091531	131128144
AIF1L_chr9_131091531_131128144	0/0	t0028	2922	1	1	0	0	0	0	copy fasta	AIF1L	chr9	131091531	131128144
AIF1L_chr9_131091531_131128144	0/0	t0029	2922	1	0	0	0	1	0	copy fasta	AIF1L	chr9	131091531	131128144
AIF1L_chr9_131091531_131128144	0/0	t0030	2922	1	0	1	0	0	0	copy fasta	AIF1L	chr9	131091531	131128144
AIF1L_chr9_131091531_131128144	0/0	t0031	2922	1	0	0	1	0	0	copy fasta	AIF1L	chr9	131091531	131128144
AIF1L_chr9_131091531_131128144	0/0	t0032	2922	1	0	0	1	0	0	copy fasta	AIF1L	chr9	131091531	131128144
AIF1L_chr9_131091531_131128144	0/0	t0033	2922	1	0	0	0	0	1	copy fasta	AIF1L	chr9	131091531	131128144
AIF1L_chr9_131091531_131128144	0/0	t0034	2922	1	0	1	0	0	0	copy fasta	AIF1L	chr9	131091531	131128144
AIF1L_chr9_131091531_131128144	0/0	t0035	2922	1	0	1	0	0	0	copy fasta	AIF1L	chr9	131091531	131128144
AIF1L_chr9_131091531_131128144	0/0	t0036	2923	1	0	1	0	0	0	copy fasta	AIF1L	chr9	131091531	131128144
AIF1_chr6_31610234_31622015	0/1	t0001	212	433	92	80	194	18	48	copy fasta	AIF1	chr6	31610234	31622015
AIF1_chr6_31610234_31622015	0/0	t0002	212	2	0	0	2	0	0	copy fasta	AIF1	chr6	31610234	31622015
AIF1_chr6_31610234_31622015	0/0	t0003	212	2	2	0	0	0	0	copy fasta	AIF1	chr6	31610234	31622015
AIFM1_chrX_130124362_130170841	1/1	t0001	381	261	63	53	106	9	28	copy fasta	AIFM1	chrX	130124362	130170841
AIFM1_chrX_130124362_130170841	0/0	t0002	379	1	1	0	0	0	0	copy fasta	AIFM1	chrX	130124362	130170841
AIFM2_chr10_70107271_70137825	1/1	t0001	2013	195	20	52	84	13	24	copy fasta	AIFM2	chr10	70107271	70137825
AIFM2_chr10_70107271_70137825	0/0	t0002	2019	49	2	4	36	2	5	copy fasta	AIFM2	chr10	70107271	70137825
AIFM2_chr10_70107271_70137825	0/0	t0003	2013	39	5	1	29	0	4	copy fasta	AIFM2	chr10	70107271	70137825
AIFM2_chr10_70107271_70137825	0/0	t0004	2013	38	1	11	25	0	1	copy fasta	AIFM2	chr10	70107271	70137825
AIFM2_chr10_70107271_70137825	0/0	t0005	2007	16	1	2	9	0	4	copy fasta	AIFM2	chr10	70107271	70137825
AIFM2_chr10_70107271_70137825	0/0	t0006	2013	12	10	1	0	1	0	copy fasta	AIFM2	chr10	70107271	70137825
AIFM2_chr10_70107271_70137825	0/0	t0007	2013	11	7	0	0	1	3	copy fasta	AIFM2	chr10	70107271	70137825
AIFM2_chr10_70107271_70137825	0/0	t0008	2019	11	1	1	7	0	2	copy fasta	AIFM2	chr10	70107271	70137825
AIFM2_chr10_70107271_70137825	0/0	t0009	2013	6	0	0	5	0	1	copy fasta	AIFM2	chr10	70107271	70137825
AIFM2_chr10_70107271_70137825	0/0	t0010	2013	6	6	0	0	0	0	copy fasta	AIFM2	chr10	70107271	70137825
AIFM2_chr10_70107271_70137825	0/0	t0011	2025	6	6	0	0	0	0	copy fasta	AIFM2	chr10	70107271	70137825
AIFM2_chr10_70107271_70137825	0/0	t0012	2007	5	0	0	5	0	0	copy fasta	AIFM2	chr10	70107271	70137825
AIFM2_chr10_70107271_70137825	0/0	t0013	2019	5	3	1	0	0	1	copy fasta	AIFM2	chr10	70107271	70137825
AIFM2_chr10_70107271_70137825	0/0	t0014	2001	3	3	0	0	0	0	copy fasta	AIFM2	chr10	70107271	70137825
AIFM2_chr10_70107271_70137825	0/0	t0015	2001	3	3	0	0	0	0	copy fasta	AIFM2	chr10	70107271	70137825
AIFM2_chr10_70107271_70137825	0/0	t0016	2013	3	3	0	0	0	0	copy fasta	AIFM2	chr10	70107271	70137825
AIFM2_chr10_70107271_70137825	0/0	t0017	2019	3	0	0	3	0	0	copy fasta	AIFM2	chr10	70107271	70137825
AIFM2_chr10_70107271_70137825	0/0	t0018	2019	3	3	0	0	0	0	copy fasta	AIFM2	chr10	70107271	70137825
AIFM2_chr10_70107271_70137825	0/0	t0019	2025	3	0	0	3	0	0	copy fasta	AIFM2	chr10	70107271	70137825
AIFM2_chr10_70107271_70137825	0/0	t0020	2007	2	0	0	1	0	1	copy fasta	AIFM2	chr10	70107271	70137825
AIFM2_chr10_70107271_70137825	0/0	t0021	2013	2	0	1	0	0	1	copy fasta	AIFM2	chr10	70107271	70137825
AIFM2_chr10_70107271_70137825	0/0	t0022	2013	2	2	0	0	0	0	copy fasta	AIFM2	chr10	70107271	70137825
AIFM2_chr10_70107271_70137825	0/0	t0023	2013	2	1	1	0	0	0	copy fasta	AIFM2	chr10	70107271	70137825
AIFM2_chr10_70107271_70137825	0/0	t0024	2013	2	0	2	0	0	0	copy fasta	AIFM2	chr10	70107271	70137825
AIFM2_chr10_70107271_70137825	0/0	t0025	2013	2	2	0	0	0	0	copy fasta	AIFM2	chr10	70107271	70137825
AIFM2_chr10_70107271_70137825	0/0	t0026	2013	2	2	0	0	0	0	copy fasta	AIFM2	chr10	70107271	70137825
AIFM2_chr10_70107271_70137825	0/0	t0027	2019	2	0	0	2	0	0	copy fasta	AIFM2	chr10	70107271	70137825
AIFM2_chr10_70107271_70137825	0/0	t0028	2025	2	1	1	0	0	0	copy fasta	AIFM2	chr10	70107271	70137825
AIFM2_chr10_70107271_70137825	0/0	t0029	2025	2	2	0	0	0	0	copy fasta	AIFM2	chr10	70107271	70137825
AIFM2_chr10_70107271_70137825	0/0	t0030	2013	2	0	2	0	0	0	copy fasta	AIFM2	chr10	70107271	70137825
AIFM2_chr10_70107271_70137825	0/0	t0031	2001	1	1	0	0	0	0	copy fasta	AIFM2	chr10	70107271	70137825
AIFM2_chr10_70107271_70137825	0/0	t0032	2001	1	1	0	0	0	0	copy fasta	AIFM2	chr10	70107271	70137825
AIFM2_chr10_70107271_70137825	0/0	t0033	2001	1	1	0	0	0	0	copy fasta	AIFM2	chr10	70107271	70137825
AIFM2_chr10_70107271_70137825	0/0	t0034	2001	1	1	0	0	0	0	copy fasta	AIFM2	chr10	70107271	70137825