JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
ETV6_chr12_11644674_11900377	0/0	t0020	4765	3	3	0	0	0	0	copy fasta	ETV6	chr12	11644674	11900377
ETV6_chr12_11644674_11900377	0/0	t0021	4786	2	1	1	0	0	0	copy fasta	ETV6	chr12	11644674	11900377
ETV6_chr12_11644674_11900377	0/0	t0022	4796	2	0	1	0	1	0	copy fasta	ETV6	chr12	11644674	11900377
ETV6_chr12_11644674_11900377	0/0	t0023	4777	2	0	1	1	0	0	copy fasta	ETV6	chr12	11644674	11900377
ETV6_chr12_11644674_11900377	0/0	t0024	4741	2	0	2	0	0	0	copy fasta	ETV6	chr12	11644674	11900377
ETV6_chr12_11644674_11900377	0/0	t0025	4764	2	2	0	0	0	0	copy fasta	ETV6	chr12	11644674	11900377
ETV6_chr12_11644674_11900377	0/0	t0026	4787	2	2	0	0	0	0	copy fasta	ETV6	chr12	11644674	11900377
ETV6_chr12_11644674_11900377	0/0	t0027	4774	2	0	1	1	0	0	copy fasta	ETV6	chr12	11644674	11900377
ETV6_chr12_11644674_11900377	0/0	t0028	4780	2	0	0	1	0	1	copy fasta	ETV6	chr12	11644674	11900377
ETV6_chr12_11644674_11900377	0/0	t0029	4792	2	1	1	0	0	0	copy fasta	ETV6	chr12	11644674	11900377
ETV6_chr12_11644674_11900377	0/0	t0030	4786	2	0	1	1	0	0	copy fasta	ETV6	chr12	11644674	11900377
ETV6_chr12_11644674_11900377	0/0	t0031	4773	2	2	0	0	0	0	copy fasta	ETV6	chr12	11644674	11900377
ETV6_chr12_11644674_11900377	0/0	t0032	4786	2	0	0	2	0	0	copy fasta	ETV6	chr12	11644674	11900377
ETV6_chr12_11644674_11900377	0/0	t0033	4784	2	0	0	0	2	0	copy fasta	ETV6	chr12	11644674	11900377
ETV6_chr12_11644674_11900377	0/0	t0034	4778	2	0	2	0	0	0	copy fasta	ETV6	chr12	11644674	11900377
ETV6_chr12_11644674_11900377	0/0	t0035	4773	1	1	0	0	0	0	copy fasta	ETV6	chr12	11644674	11900377
ETV6_chr12_11644674_11900377	0/0	t0036	4782	1	1	0	0	0	0	copy fasta	ETV6	chr12	11644674	11900377
ETV6_chr12_11644674_11900377	0/0	t0037	4774	1	1	0	0	0	0	copy fasta	ETV6	chr12	11644674	11900377
ETV6_chr12_11644674_11900377	0/0	t0038	4786	1	0	0	1	0	0	copy fasta	ETV6	chr12	11644674	11900377
ETV6_chr12_11644674_11900377	0/0	t0039	4772	1	0	0	0	0	1	copy fasta	ETV6	chr12	11644674	11900377
ETV6_chr12_11644674_11900377	0/0	t0040	4775	1	0	1	0	0	0	copy fasta	ETV6	chr12	11644674	11900377
ETV6_chr12_11644674_11900377	0/0	t0041	4777	1	0	1	0	0	0	copy fasta	ETV6	chr12	11644674	11900377
ETV6_chr12_11644674_11900377	0/0	t0042	4776	1	0	1	0	0	0	copy fasta	ETV6	chr12	11644674	11900377
ETV6_chr12_11644674_11900377	0/0	t0043	4776	1	0	0	1	0	0	copy fasta	ETV6	chr12	11644674	11900377
ETV6_chr12_11644674_11900377	0/0	t0044	4778	1	0	0	1	0	0	copy fasta	ETV6	chr12	11644674	11900377
ETV6_chr12_11644674_11900377	0/0	t0045	4780	1	0	0	1	0	0	copy fasta	ETV6	chr12	11644674	11900377
ETV6_chr12_11644674_11900377	0/0	t0046	4778	1	0	0	1	0	0	copy fasta	ETV6	chr12	11644674	11900377
ETV6_chr12_11644674_11900377	0/0	t0047	4780	1	0	0	1	0	0	copy fasta	ETV6	chr12	11644674	11900377
ETV6_chr12_11644674_11900377	0/0	t0048	4786	1	0	0	1	0	0	copy fasta	ETV6	chr12	11644674	11900377
ETV6_chr12_11644674_11900377	0/0	t0049	4777	1	0	0	1	0	0	copy fasta	ETV6	chr12	11644674	11900377
ETV6_chr12_11644674_11900377	0/1	t0050	4770	1	0	0	0	0	0	copy fasta	ETV6	chr12	11644674	11900377
ETV6_chr12_11644674_11900377	0/0	t0051	4772	1	0	1	0	0	0	copy fasta	ETV6	chr12	11644674	11900377
ETV6_chr12_11644674_11900377	0/0	t0052	4759	1	0	1	0	0	0	copy fasta	ETV6	chr12	11644674	11900377
ETV6_chr12_11644674_11900377	0/0	t0053	4786	1	0	0	0	1	0	copy fasta	ETV6	chr12	11644674	11900377
ETV6_chr12_11644674_11900377	0/0	t0054	4784	1	0	0	1	0	0	copy fasta	ETV6	chr12	11644674	11900377
ETV6_chr12_11644674_11900377	0/0	t0055	4786	1	0	0	1	0	0	copy fasta	ETV6	chr12	11644674	11900377
ETV6_chr12_11644674_11900377	0/0	t0056	4792	1	0	0	1	0	0	copy fasta	ETV6	chr12	11644674	11900377
ETV6_chr12_11644674_11900377	0/0	t0057	4781	1	0	0	1	0	0	copy fasta	ETV6	chr12	11644674	11900377
ETV6_chr12_11644674_11900377	0/0	t0058	4781	1	0	0	0	0	1	copy fasta	ETV6	chr12	11644674	11900377
ETV6_chr12_11644674_11900377	0/0	t0059	4783	1	0	0	1	0	0	copy fasta	ETV6	chr12	11644674	11900377
ETV6_chr12_11644674_11900377	0/0	t0060	4793	1	0	0	1	0	0	copy fasta	ETV6	chr12	11644674	11900377
ETV6_chr12_11644674_11900377	0/0	t0061	4786	1	0	0	1	0	0	copy fasta	ETV6	chr12	11644674	11900377
ETV6_chr12_11644674_11900377	0/0	t0062	4764	1	1	0	0	0	0	copy fasta	ETV6	chr12	11644674	11900377
ETV6_chr12_11644674_11900377	0/0	t0063	4776	1	0	0	0	0	1	copy fasta	ETV6	chr12	11644674	11900377
ETV6_chr12_11644674_11900377	0/0	t0064	4774	1	0	0	0	0	1	copy fasta	ETV6	chr12	11644674	11900377
ETV6_chr12_11644674_11900377	0/0	t0065	4794	1	0	1	0	0	0	copy fasta	ETV6	chr12	11644674	11900377
ETV6_chr12_11644674_11900377	0/0	t0066	4763	1	1	0	0	0	0	copy fasta	ETV6	chr12	11644674	11900377
ETV6_chr12_11644674_11900377	0/0	t0067	4767	1	1	0	0	0	0	copy fasta	ETV6	chr12	11644674	11900377
ETV6_chr12_11644674_11900377	0/0	t0068	4766	1	1	0	0	0	0	copy fasta	ETV6	chr12	11644674	11900377
ETV6_chr12_11644674_11900377	0/0	t0069	4777	1	1	0	0	0	0	copy fasta	ETV6	chr12	11644674	11900377