JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
ETV6_chr12_11644674_11900377	0/0	t0120	4789	1	0	0	1	0	0	copy fasta	ETV6	chr12	11644674	11900377
ETV6_chr12_11644674_11900377	0/0	t0121	4782	1	0	0	1	0	0	copy fasta	ETV6	chr12	11644674	11900377
ETV6_chr12_11644674_11900377	0/0	t0122	4790	1	0	1	0	0	0	copy fasta	ETV6	chr12	11644674	11900377
ETV6_chr12_11644674_11900377	0/0	t0123	4794	1	0	1	0	0	0	copy fasta	ETV6	chr12	11644674	11900377
ETV6_chr12_11644674_11900377	0/0	t0124	4773	1	1	0	0	0	0	copy fasta	ETV6	chr12	11644674	11900377
ETV6_chr12_11644674_11900377	0/0	t0125	4760	1	1	0	0	0	0	copy fasta	ETV6	chr12	11644674	11900377
ETV6_chr12_11644674_11900377	0/0	t0126	4776	1	0	0	1	0	0	copy fasta	ETV6	chr12	11644674	11900377
ETV6_chr12_11644674_11900377	0/0	t0127	4782	1	0	0	1	0	0	copy fasta	ETV6	chr12	11644674	11900377
ETV6_chr12_11644674_11900377	0/0	t0128	4786	1	0	0	1	0	0	copy fasta	ETV6	chr12	11644674	11900377
ETV6_chr12_11644674_11900377	0/0	t0129	4792	1	0	0	1	0	0	copy fasta	ETV6	chr12	11644674	11900377
ETV6_chr12_11644674_11900377	0/0	t0130	4783	1	0	0	1	0	0	copy fasta	ETV6	chr12	11644674	11900377
ETV6_chr12_11644674_11900377	0/0	t0131	4789	1	0	0	1	0	0	copy fasta	ETV6	chr12	11644674	11900377
ETV6_chr12_11644674_11900377	0/0	t0132	4765	1	1	0	0	0	0	copy fasta	ETV6	chr12	11644674	11900377
ETV6_chr12_11644674_11900377	0/0	t0133	4786	1	0	0	0	0	1	copy fasta	ETV6	chr12	11644674	11900377
ETV6_chr12_11644674_11900377	0/0	t0134	4772	1	1	0	0	0	0	copy fasta	ETV6	chr12	11644674	11900377
ETV6_chr12_11644674_11900377	0/0	t0135	4768	1	1	0	0	0	0	copy fasta	ETV6	chr12	11644674	11900377
ETV7_chr6_36361194_36392669	1/0	t0001	580	299	75	60	129	7	27	copy fasta	ETV7	chr6	36361194	36392669
ETV7_chr6_36361194_36392669	0/0	t0002	580	132	18	25	61	9	19	copy fasta	ETV7	chr6	36361194	36392669
ETV7_chr6_36361194_36392669	0/0	t0003	580	10	0	0	10	0	0	copy fasta	ETV7	chr6	36361194	36392669
ETV7_chr6_36361194_36392669	0/0	t0004	580	9	4	0	4	0	1	copy fasta	ETV7	chr6	36361194	36392669
ETV7_chr6_36361194_36392669	0/0	t0005	580	3	0	0	3	0	0	copy fasta	ETV7	chr6	36361194	36392669
ETV7_chr6_36361194_36392669	0/0	t0006	580	3	1	0	2	0	0	copy fasta	ETV7	chr6	36361194	36392669
ETV7_chr6_36361194_36392669	0/0	t0007	580	2	2	0	0	0	0	copy fasta	ETV7	chr6	36361194	36392669
ETV7_chr6_36361194_36392669	0/0	t0008	580	2	0	0	1	0	1	copy fasta	ETV7	chr6	36361194	36392669
ETV7_chr6_36361194_36392669	0/0	t0009	580	1	0	1	0	0	0	copy fasta	ETV7	chr6	36361194	36392669
ETV7_chr6_36361194_36392669	0/1	t0010	580	1	0	0	0	0	0	copy fasta	ETV7	chr6	36361194	36392669
EVA1A_chr2_75487318_75565939	0/0	t0001	1372	70	14	4	45	1	6	copy fasta	EVA1A	chr2	75487318	75565939
EVA1A_chr2_75487318_75565939	0/0	t0002	1372	58	1	15	36	0	6	copy fasta	EVA1A	chr2	75487318	75565939
EVA1A_chr2_75487318_75565939	0/0	t0003	1372	48	2	8	30	4	4	copy fasta	EVA1A	chr2	75487318	75565939
EVA1A_chr2_75487318_75565939	0/1	t0004	1371	36	6	12	8	1	8	copy fasta	EVA1A	chr2	75487318	75565939
EVA1A_chr2_75487318_75565939	0/0	t0005	1372	32	10	5	12	2	3	copy fasta	EVA1A	chr2	75487318	75565939
EVA1A_chr2_75487318_75565939	1/0	t0006	1370	18	1	3	11	1	1	copy fasta	EVA1A	chr2	75487318	75565939
EVA1A_chr2_75487318_75565939	0/0	t0007	1371	17	7	4	3	2	1	copy fasta	EVA1A	chr2	75487318	75565939
EVA1A_chr2_75487318_75565939	0/0	t0008	1370	17	3	3	6	2	3	copy fasta	EVA1A	chr2	75487318	75565939
EVA1A_chr2_75487318_75565939	0/0	t0009	1372	13	6	3	2	1	1	copy fasta	EVA1A	chr2	75487318	75565939
EVA1A_chr2_75487318_75565939	0/0	t0010	1371	12	2	0	5	1	4	copy fasta	EVA1A	chr2	75487318	75565939
EVA1A_chr2_75487318_75565939	0/0	t0011	1373	8	8	0	0	0	0	copy fasta	EVA1A	chr2	75487318	75565939
EVA1A_chr2_75487318_75565939	0/0	t0012	1372	7	7	0	0	0	0	copy fasta	EVA1A	chr2	75487318	75565939
EVA1A_chr2_75487318_75565939	0/0	t0013	1372	7	0	7	0	0	0	copy fasta	EVA1A	chr2	75487318	75565939
EVA1A_chr2_75487318_75565939	0/0	t0014	1371	6	4	0	0	0	2	copy fasta	EVA1A	chr2	75487318	75565939
EVA1A_chr2_75487318_75565939	0/0	t0015	1373	4	4	0	0	0	0	copy fasta	EVA1A	chr2	75487318	75565939
EVA1A_chr2_75487318_75565939	0/0	t0016	1370	3	0	1	0	2	0	copy fasta	EVA1A	chr2	75487318	75565939
EVA1A_chr2_75487318_75565939	0/0	t0017	1370	3	0	1	2	0	0	copy fasta	EVA1A	chr2	75487318	75565939
EVA1A_chr2_75487318_75565939	0/0	t0018	1373	2	2	0	0	0	0	copy fasta	EVA1A	chr2	75487318	75565939
EVA1A_chr2_75487318_75565939	0/0	t0019	1372	2	2	0	0	0	0	copy fasta	EVA1A	chr2	75487318	75565939
EVA1A_chr2_75487318_75565939	0/0	t0020	1372	2	0	1	0	1	0	copy fasta	EVA1A	chr2	75487318	75565939
EVA1A_chr2_75487318_75565939	0/0	t0021	1373	2	2	0	0	0	0	copy fasta	EVA1A	chr2	75487318	75565939
EVA1A_chr2_75487318_75565939	0/0	t0022	1370	1	0	1	0	0	0	copy fasta	EVA1A	chr2	75487318	75565939
EVA1A_chr2_75487318_75565939	0/0	t0023	1370	1	1	0	0	0	0	copy fasta	EVA1A	chr2	75487318	75565939
EVA1A_chr2_75487318_75565939	0/0	t0024	1372	1	1	0	0	0	0	copy fasta	EVA1A	chr2	75487318	75565939