JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
EVA1A_chr2_75487318_75565939	0/0	t0025	1373	1	1	0	0	0	0	copy fasta	EVA1A	chr2	75487318	75565939
EVA1A_chr2_75487318_75565939	0/0	t0026	1373	1	1	0	0	0	0	copy fasta	EVA1A	chr2	75487318	75565939
EVA1A_chr2_75487318_75565939	0/0	t0027	1372	1	1	0	0	0	0	copy fasta	EVA1A	chr2	75487318	75565939
EVA1A_chr2_75487318_75565939	0/0	t0028	1372	1	0	1	0	0	0	copy fasta	EVA1A	chr2	75487318	75565939
EVA1A_chr2_75487318_75565939	0/0	t0029	1373	1	0	1	0	0	0	copy fasta	EVA1A	chr2	75487318	75565939
EVA1A_chr2_75487318_75565939	0/0	t0030	1373	1	1	0	0	0	0	copy fasta	EVA1A	chr2	75487318	75565939
EVA1A_chr2_75487318_75565939	0/0	t0031	1372	1	0	0	0	0	1	copy fasta	EVA1A	chr2	75487318	75565939
EVA1A_chr2_75487318_75565939	0/0	t0032	1372	1	1	0	0	0	0	copy fasta	EVA1A	chr2	75487318	75565939
EVA1A_chr2_75487318_75565939	0/0	t0033	1372	1	1	0	0	0	0	copy fasta	EVA1A	chr2	75487318	75565939
EVA1A_chr2_75487318_75565939	0/0	t0034	1371	1	1	0	0	0	0	copy fasta	EVA1A	chr2	75487318	75565939
EVA1A_chr2_75487318_75565939	0/0	t0035	1372	1	1	0	0	0	0	copy fasta	EVA1A	chr2	75487318	75565939
EVA1A_chr2_75487318_75565939	0/0	t0036	1372	1	1	0	0	0	0	copy fasta	EVA1A	chr2	75487318	75565939
EVA1A_chr2_75487318_75565939	0/0	t0037	1371	1	1	0	0	0	0	copy fasta	EVA1A	chr2	75487318	75565939
EVA1A_chr2_75487318_75565939	0/0	t0038	1373	1	1	0	0	0	0	copy fasta	EVA1A	chr2	75487318	75565939
EVA1B_chr1_36317030_36328645	1/1	t0001	483	335	93	64	137	12	27	copy fasta	EVA1B	chr1	36317030	36328645
EVA1B_chr1_36317030_36328645	0/0	t0002	483	67	4	22	19	4	18	copy fasta	EVA1B	chr1	36317030	36328645
EVA1B_chr1_36317030_36328645	0/0	t0003	483	1	1	0	0	0	0	copy fasta	EVA1B	chr1	36317030	36328645
EVA1B_chr1_36317030_36328645	0/0	t0004	483	1	0	0	1	0	0	copy fasta	EVA1B	chr1	36317030	36328645
EVA1B_chr1_36317030_36328645	0/0	t0005	483	1	0	0	0	0	1	copy fasta	EVA1B	chr1	36317030	36328645
EVA1B_chr1_36317030_36328645	0/0	t0006	494	1	0	0	1	0	0	copy fasta	EVA1B	chr1	36317030	36328645
EVA1C_chr21_32407706_32520387	1/1	t0001	346	327	80	65	130	14	36	copy fasta	EVA1C	chr21	32407706	32520387
EVA1C_chr21_32407706_32520387	0/0	t0002	346	12	5	3	2	0	2	copy fasta	EVA1C	chr21	32407706	32520387
EVA1C_chr21_32407706_32520387	0/0	t0003	346	4	0	0	4	0	0	copy fasta	EVA1C	chr21	32407706	32520387
EVA1C_chr21_32407706_32520387	0/0	t0004	346	2	2	0	0	0	0	copy fasta	EVA1C	chr21	32407706	32520387
EVA1C_chr21_32407706_32520387	0/0	t0005	346	1	1	0	0	0	0	copy fasta	EVA1C	chr21	32407706	32520387
EVC2_chr4_5557439_5713559	0/0	t0001	456	132	30	41	30	9	22	copy fasta	EVC2	chr4	5557439	5713559
EVC2_chr4_5557439_5713559	1/0	t0002	456	132	51	21	46	2	11	copy fasta	EVC2	chr4	5557439	5713559
EVC2_chr4_5557439_5713559	0/1	t0003	456	14	0	1	10	0	2	copy fasta	EVC2	chr4	5557439	5713559
EVC2_chr4_5557439_5713559	0/0	t0004	456	8	0	0	4	1	3	copy fasta	EVC2	chr4	5557439	5713559
EVC2_chr4_5557439_5713559	0/0	t0005	456	3	3	0	0	0	0	copy fasta	EVC2	chr4	5557439	5713559
EVC2_chr4_5557439_5713559	0/0	t0006	456	2	2	0	0	0	0	copy fasta	EVC2	chr4	5557439	5713559
EVC2_chr4_5557439_5713559	0/0	t0007	456	1	0	1	0	0	0	copy fasta	EVC2	chr4	5557439	5713559
EVC_chr4_5706201_5819305	1/0	t0001	3449	98	14	16	58	0	9	copy fasta	EVC	chr4	5706201	5819305
EVC_chr4_5706201_5819305	0/0	t0002	3449	71	2	12	45	3	9	copy fasta	EVC	chr4	5706201	5819305
EVC_chr4_5706201_5819305	0/0	t0003	3448	61	0	12	36	1	12	copy fasta	EVC	chr4	5706201	5819305
EVC_chr4_5706201_5819305	0/0	t0004	3390	17	6	4	2	4	1	copy fasta	EVC	chr4	5706201	5819305
EVC_chr4_5706201_5819305	0/0	t0005	3448	17	7	3	0	2	5	copy fasta	EVC	chr4	5706201	5819305
EVC_chr4_5706201_5819305	0/0	t0006	3449	10	8	2	0	0	0	copy fasta	EVC	chr4	5706201	5819305
EVC_chr4_5706201_5819305	0/0	t0007	3449	9	0	1	0	1	7	copy fasta	EVC	chr4	5706201	5819305
EVC_chr4_5706201_5819305	0/0	t0008	3449	9	2	5	0	2	0	copy fasta	EVC	chr4	5706201	5819305
EVC_chr4_5706201_5819305	0/0	t0009	3449	8	8	0	0	0	0	copy fasta	EVC	chr4	5706201	5819305
EVC_chr4_5706201_5819305	0/0	t0010	3449	6	4	2	0	0	0	copy fasta	EVC	chr4	5706201	5819305
EVC_chr4_5706201_5819305	0/0	t0011	3449	5	0	3	0	2	0	copy fasta	EVC	chr4	5706201	5819305
EVC_chr4_5706201_5819305	0/0	t0012	3448	5	5	0	0	0	0	copy fasta	EVC	chr4	5706201	5819305
EVC_chr4_5706201_5819305	0/0	t0013	3448	4	4	0	0	0	0	copy fasta	EVC	chr4	5706201	5819305
EVC_chr4_5706201_5819305	0/0	t0014	3448	4	4	0	0	0	0	copy fasta	EVC	chr4	5706201	5819305
EVC_chr4_5706201_5819305	0/0	t0015	3449	4	4	0	0	0	0	copy fasta	EVC	chr4	5706201	5819305
EVC_chr4_5706201_5819305	0/0	t0016	3391	3	3	0	0	0	0	copy fasta	EVC	chr4	5706201	5819305
EVC_chr4_5706201_5819305	0/0	t0017	3449	3	2	1	0	0	0	copy fasta	EVC	chr4	5706201	5819305
EVC_chr4_5706201_5819305	0/0	t0018	3449	2	2	0	0	0	0	copy fasta	EVC	chr4	5706201	5819305