JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
EVC_chr4_5706201_5819305	0/0	t0019	3449	2	2	0	0	0	0	copy fasta	EVC	chr4	5706201	5819305
EVC_chr4_5706201_5819305	0/0	t0020	3448	2	0	2	0	0	0	copy fasta	EVC	chr4	5706201	5819305
EVC_chr4_5706201_5819305	0/0	t0021	3449	2	2	0	0	0	0	copy fasta	EVC	chr4	5706201	5819305
EVC_chr4_5706201_5819305	0/0	t0022	3507	2	0	0	2	0	0	copy fasta	EVC	chr4	5706201	5819305
EVC_chr4_5706201_5819305	0/0	t0023	3449	1	1	0	0	0	0	copy fasta	EVC	chr4	5706201	5819305
EVC_chr4_5706201_5819305	0/0	t0024	3449	1	0	1	0	0	0	copy fasta	EVC	chr4	5706201	5819305
EVC_chr4_5706201_5819305	0/0	t0025	3391	1	0	0	1	0	0	copy fasta	EVC	chr4	5706201	5819305
EVC_chr4_5706201_5819305	0/0	t0026	3390	1	1	0	0	0	0	copy fasta	EVC	chr4	5706201	5819305
EVC_chr4_5706201_5819305	0/0	t0027	3390	1	1	0	0	0	0	copy fasta	EVC	chr4	5706201	5819305
EVC_chr4_5706201_5819305	0/0	t0028	3448	1	1	0	0	0	0	copy fasta	EVC	chr4	5706201	5819305
EVC_chr4_5706201_5819305	0/0	t0029	3448	1	0	0	0	1	0	copy fasta	EVC	chr4	5706201	5819305
EVC_chr4_5706201_5819305	0/0	t0030	3448	1	0	0	1	0	0	copy fasta	EVC	chr4	5706201	5819305
EVC_chr4_5706201_5819305	0/0	t0031	3448	1	0	0	1	0	0	copy fasta	EVC	chr4	5706201	5819305
EVC_chr4_5706201_5819305	0/0	t0032	3448	1	1	0	0	0	0	copy fasta	EVC	chr4	5706201	5819305
EVC_chr4_5706201_5819305	0/0	t0033	3449	1	1	0	0	0	0	copy fasta	EVC	chr4	5706201	5819305
EVC_chr4_5706201_5819305	0/0	t0034	3448	1	1	0	0	0	0	copy fasta	EVC	chr4	5706201	5819305
EVC_chr4_5706201_5819305	0/0	t0035	3449	1	0	0	1	0	0	copy fasta	EVC	chr4	5706201	5819305
EVC_chr4_5706201_5819305	0/0	t0036	3449	1	0	1	0	0	0	copy fasta	EVC	chr4	5706201	5819305
EVC_chr4_5706201_5819305	0/0	t0037	3449	1	1	0	0	0	0	copy fasta	EVC	chr4	5706201	5819305
EVC_chr4_5706201_5819305	0/0	t0038	3449	1	0	0	1	0	0	copy fasta	EVC	chr4	5706201	5819305
EVC_chr4_5706201_5819305	0/0	t0039	3449	1	0	0	1	0	0	copy fasta	EVC	chr4	5706201	5819305
EVC_chr4_5706201_5819305	0/0	t0040	3449	1	0	1	0	0	0	copy fasta	EVC	chr4	5706201	5819305
EVC_chr4_5706201_5819305	0/0	t0041	3449	1	0	0	1	0	0	copy fasta	EVC	chr4	5706201	5819305
EVC_chr4_5706201_5819305	0/0	t0042	3449	1	0	0	1	0	0	copy fasta	EVC	chr4	5706201	5819305
EVC_chr4_5706201_5819305	0/0	t0043	3429	1	0	0	1	0	0	copy fasta	EVC	chr4	5706201	5819305
EVC_chr4_5706201_5819305	0/0	t0044	3449	1	0	0	0	0	1	copy fasta	EVC	chr4	5706201	5819305
EVC_chr4_5706201_5819305	0/0	t0045	3449	1	1	0	0	0	0	copy fasta	EVC	chr4	5706201	5819305
EVC_chr4_5706201_5819305	0/0	t0046	3449	1	1	0	0	0	0	copy fasta	EVC	chr4	5706201	5819305
EVC_chr4_5706201_5819305	0/0	t0047	3449	1	1	0	0	0	0	copy fasta	EVC	chr4	5706201	5819305
EVI2A_chr17_31311410_31326622	0/0	t0001	2034	86	3	14	53	5	11	copy fasta	EVI2A	chr17	31311410	31326622
EVI2A_chr17_31311410_31326622	0/0	t0002	2034	81	8	14	46	2	11	copy fasta	EVI2A	chr17	31311410	31326622
EVI2A_chr17_31311410_31326622	0/0	t0003	2036	24	2	1	17	2	2	copy fasta	EVI2A	chr17	31311410	31326622
EVI2A_chr17_31311410_31326622	0/0	t0004	2032	23	9	4	10	0	0	copy fasta	EVI2A	chr17	31311410	31326622
EVI2A_chr17_31311410_31326622	1/0	t0005	2032	21	5	7	5	1	2	copy fasta	EVI2A	chr17	31311410	31326622
EVI2A_chr17_31311410_31326622	0/0	t0006	2034	17	13	4	0	0	0	copy fasta	EVI2A	chr17	31311410	31326622
EVI2A_chr17_31311410_31326622	0/0	t0007	2036	16	0	7	3	0	6	copy fasta	EVI2A	chr17	31311410	31326622
EVI2A_chr17_31311410_31326622	0/0	t0008	2030	14	13	1	0	0	0	copy fasta	EVI2A	chr17	31311410	31326622
EVI2A_chr17_31311410_31326622	0/0	t0009	2032	10	0	0	10	0	0	copy fasta	EVI2A	chr17	31311410	31326622
EVI2A_chr17_31311410_31326622	0/0	t0010	2034	7	7	0	0	0	0	copy fasta	EVI2A	chr17	31311410	31326622
EVI2A_chr17_31311410_31326622	0/0	t0011	2034	6	2	4	0	0	0	copy fasta	EVI2A	chr17	31311410	31326622
EVI2A_chr17_31311410_31326622	0/0	t0012	2040	6	1	1	1	1	2	copy fasta	EVI2A	chr17	31311410	31326622
EVI2A_chr17_31311410_31326622	0/0	t0013	2034	6	4	0	2	0	0	copy fasta	EVI2A	chr17	31311410	31326622
EVI2A_chr17_31311410_31326622	0/1	t0014	2030	5	0	3	0	1	0	copy fasta	EVI2A	chr17	31311410	31326622
EVI2A_chr17_31311410_31326622	0/0	t0015	2038	4	1	1	2	0	0	copy fasta	EVI2A	chr17	31311410	31326622
EVI2A_chr17_31311410_31326622	0/0	t0016	2040	4	4	0	0	0	0	copy fasta	EVI2A	chr17	31311410	31326622
EVI2A_chr17_31311410_31326622	0/0	t0017	2042	3	0	1	2	0	0	copy fasta	EVI2A	chr17	31311410	31326622
EVI2A_chr17_31311410_31326622	0/0	t0018	2034	3	0	0	0	0	3	copy fasta	EVI2A	chr17	31311410	31326622
EVI2A_chr17_31311410_31326622	0/0	t0019	2032	3	3	0	0	0	0	copy fasta	EVI2A	chr17	31311410	31326622
EVI2A_chr17_31311410_31326622	0/0	t0020	2035	3	0	0	2	0	1	copy fasta	EVI2A	chr17	31311410	31326622
EVI2A_chr17_31311410_31326622	0/0	t0021	2034	2	0	0	2	0	0	copy fasta	EVI2A	chr17	31311410	31326622