JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
EVI2A_chr17_31311410_31326622	0/0	t0022	2040	2	1	0	1	0	0	copy fasta	EVI2A	chr17	31311410	31326622
EVI2A_chr17_31311410_31326622	0/0	t0023	2034	2	0	0	2	0	0	copy fasta	EVI2A	chr17	31311410	31326622
EVI2A_chr17_31311410_31326622	0/0	t0024	2030	2	2	0	0	0	0	copy fasta	EVI2A	chr17	31311410	31326622
EVI2A_chr17_31311410_31326622	0/0	t0025	2032	2	1	1	0	0	0	copy fasta	EVI2A	chr17	31311410	31326622
EVI2A_chr17_31311410_31326622	0/0	t0026	2032	2	1	1	0	0	0	copy fasta	EVI2A	chr17	31311410	31326622
EVI2A_chr17_31311410_31326622	0/0	t0027	2032	2	2	0	0	0	0	copy fasta	EVI2A	chr17	31311410	31326622
EVI2A_chr17_31311410_31326622	0/0	t0028	2028	2	2	0	0	0	0	copy fasta	EVI2A	chr17	31311410	31326622
EVI2A_chr17_31311410_31326622	0/0	t0029	2038	2	0	1	1	0	0	copy fasta	EVI2A	chr17	31311410	31326622
EVI2A_chr17_31311410_31326622	0/0	t0030	2039	2	0	0	2	0	0	copy fasta	EVI2A	chr17	31311410	31326622
EVI2A_chr17_31311410_31326622	0/0	t0031	2036	1	1	0	0	0	0	copy fasta	EVI2A	chr17	31311410	31326622
EVI2A_chr17_31311410_31326622	0/0	t0032	2042	1	0	0	1	0	0	copy fasta	EVI2A	chr17	31311410	31326622
EVI2A_chr17_31311410_31326622	0/0	t0033	2038	1	0	0	1	0	0	copy fasta	EVI2A	chr17	31311410	31326622
EVI2A_chr17_31311410_31326622	0/0	t0034	2030	1	1	0	0	0	0	copy fasta	EVI2A	chr17	31311410	31326622
EVI2A_chr17_31311410_31326622	0/0	t0035	2034	1	0	0	1	0	0	copy fasta	EVI2A	chr17	31311410	31326622
EVI2A_chr17_31311410_31326622	0/0	t0036	2035	1	0	1	0	0	0	copy fasta	EVI2A	chr17	31311410	31326622
EVI2A_chr17_31311410_31326622	0/0	t0037	2034	1	0	0	1	0	0	copy fasta	EVI2A	chr17	31311410	31326622
EVI2A_chr17_31311410_31326622	0/0	t0038	2040	1	1	0	0	0	0	copy fasta	EVI2A	chr17	31311410	31326622
EVI2A_chr17_31311410_31326622	0/0	t0039	2028	1	0	0	1	0	0	copy fasta	EVI2A	chr17	31311410	31326622
EVI2A_chr17_31311410_31326622	0/0	t0040	2046	1	0	0	1	0	0	copy fasta	EVI2A	chr17	31311410	31326622
EVI2A_chr17_31311410_31326622	0/0	t0041	2044	1	0	0	1	0	0	copy fasta	EVI2A	chr17	31311410	31326622
EVI2A_chr17_31311410_31326622	0/0	t0042	2034	1	0	0	1	0	0	copy fasta	EVI2A	chr17	31311410	31326622
EVI2A_chr17_31311410_31326622	0/0	t0043	2028	1	1	0	0	0	0	copy fasta	EVI2A	chr17	31311410	31326622
EVI2A_chr17_31311410_31326622	0/0	t0044	2028	1	1	0	0	0	0	copy fasta	EVI2A	chr17	31311410	31326622
EVI2A_chr17_31311410_31326622	0/0	t0045	2039	1	0	0	1	0	0	copy fasta	EVI2A	chr17	31311410	31326622
EVI2A_chr17_31311410_31326622	0/0	t0046	2032	1	1	0	0	0	0	copy fasta	EVI2A	chr17	31311410	31326622
EVI2B_chr17_31298770_31319054	1/1	t0001	591	207	50	28	105	8	14	copy fasta	EVI2B	chr17	31298770	31319054
EVI2B_chr17_31298770_31319054	0/0	t0002	591	128	17	19	75	3	14	copy fasta	EVI2B	chr17	31298770	31319054
EVI2B_chr17_31298770_31319054	0/0	t0003	591	26	18	8	0	0	0	copy fasta	EVI2B	chr17	31298770	31319054
EVI2B_chr17_31298770_31319054	0/0	t0004	591	3	1	1	0	1	0	copy fasta	EVI2B	chr17	31298770	31319054
EVI2B_chr17_31298770_31319054	0/0	t0005	591	3	1	2	0	0	0	copy fasta	EVI2B	chr17	31298770	31319054
EVI2B_chr17_31298770_31319054	0/0	t0006	591	2	0	0	0	0	2	copy fasta	EVI2B	chr17	31298770	31319054
EVI2B_chr17_31298770_31319054	0/0	t0007	591	1	0	0	0	0	1	copy fasta	EVI2B	chr17	31298770	31319054
EVI2B_chr17_31298770_31319054	0/0	t0008	591	1	0	0	0	0	1	copy fasta	EVI2B	chr17	31298770	31319054
EVI2B_chr17_31298770_31319054	0/0	t0009	591	1	1	0	0	0	0	copy fasta	EVI2B	chr17	31298770	31319054
EVI5L_chr19_7825218_7869976	0/1	t0001	1486	279	45	63	121	14	35	copy fasta	EVI5L	chr19	7825218	7869976
EVI5L_chr19_7825218_7869976	1/0	t0002	1486	47	20	0	26	0	0	copy fasta	EVI5L	chr19	7825218	7869976
EVI5L_chr19_7825218_7869976	0/0	t0003	1486	28	16	9	0	0	3	copy fasta	EVI5L	chr19	7825218	7869976
EVI5L_chr19_7825218_7869976	0/0	t0004	1486	27	3	1	19	1	3	copy fasta	EVI5L	chr19	7825218	7869976
EVI5L_chr19_7825218_7869976	0/0	t0005	1486	3	3	0	0	0	0	copy fasta	EVI5L	chr19	7825218	7869976
EVI5L_chr19_7825218_7869976	0/0	t0006	1486	2	0	0	2	0	0	copy fasta	EVI5L	chr19	7825218	7869976
EVI5L_chr19_7825218_7869976	0/0	t0007	1486	1	0	0	1	0	0	copy fasta	EVI5L	chr19	7825218	7869976
EVI5L_chr19_7825218_7869976	0/0	t0008	1486	1	0	0	0	0	1	copy fasta	EVI5L	chr19	7825218	7869976
EVI5L_chr19_7825218_7869976	0/0	t0009	1486	1	0	0	0	1	0	copy fasta	EVI5L	chr19	7825218	7869976
EVI5L_chr19_7825218_7869976	0/0	t0010	1486	1	0	0	0	0	1	copy fasta	EVI5L	chr19	7825218	7869976
EVI5L_chr19_7825218_7869976	0/0	t0011	1486	1	1	0	0	0	0	copy fasta	EVI5L	chr19	7825218	7869976
EVI5L_chr19_7825218_7869976	0/0	t0012	1486	1	0	1	0	0	0	copy fasta	EVI5L	chr19	7825218	7869976
EVI5L_chr19_7825218_7869976	0/0	t0013	1486	1	1	0	0	0	0	copy fasta	EVI5L	chr19	7825218	7869976
EVI5L_chr19_7825218_7869976	0/0	t0014	1486	1	1	0	0	0	0	copy fasta	EVI5L	chr19	7825218	7869976
EVI5L_chr19_7825218_7869976	0/0	t0015	1486	1	0	0	0	0	1	copy fasta	EVI5L	chr19	7825218	7869976
EVI5L_chr19_7825218_7869976	0/0	t0016	1486	1	0	0	1	0	0	copy fasta	EVI5L	chr19	7825218	7869976