JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
EVI5_chr1_92503696_92790108	0/0	t0001	5283	35	11	6	13	1	4	copy fasta	EVI5	chr1	92503696	92790108
EVI5_chr1_92503696_92790108	0/1	t0002	5285	12	5	5	0	0	1	copy fasta	EVI5	chr1	92503696	92790108
EVI5_chr1_92503696_92790108	0/0	t0003	5287	10	10	0	0	0	0	copy fasta	EVI5	chr1	92503696	92790108
EVI5_chr1_92503696_92790108	0/0	t0004	5296	6	0	4	0	1	1	copy fasta	EVI5	chr1	92503696	92790108
EVI5_chr1_92503696_92790108	0/0	t0005	5284	6	6	0	0	0	0	copy fasta	EVI5	chr1	92503696	92790108
EVI5_chr1_92503696_92790108	1/0	t0006	5315	5	2	0	1	1	0	copy fasta	EVI5	chr1	92503696	92790108
EVI5_chr1_92503696_92790108	0/0	t0007	5316	5	0	2	3	0	0	copy fasta	EVI5	chr1	92503696	92790108
EVI5_chr1_92503696_92790108	0/0	t0008	5283	5	2	3	0	0	0	copy fasta	EVI5	chr1	92503696	92790108
EVI5_chr1_92503696_92790108	0/0	t0009	5281	4	4	0	0	0	0	copy fasta	EVI5	chr1	92503696	92790108
EVI5_chr1_92503696_92790108	0/0	t0010	5311	4	0	1	2	1	0	copy fasta	EVI5	chr1	92503696	92790108
EVI5_chr1_92503696_92790108	0/0	t0011	5298	4	0	1	0	0	3	copy fasta	EVI5	chr1	92503696	92790108
EVI5_chr1_92503696_92790108	0/0	t0012	5285	4	4	0	0	0	0	copy fasta	EVI5	chr1	92503696	92790108
EVI5_chr1_92503696_92790108	0/0	t0013	5322	3	0	1	1	0	1	copy fasta	EVI5	chr1	92503696	92790108
EVI5_chr1_92503696_92790108	0/0	t0014	5300	3	0	3	0	0	0	copy fasta	EVI5	chr1	92503696	92790108
EVI5_chr1_92503696_92790108	0/0	t0015	5294	3	1	0	0	0	2	copy fasta	EVI5	chr1	92503696	92790108
EVI5_chr1_92503696_92790108	0/0	t0016	5293	3	2	0	0	0	1	copy fasta	EVI5	chr1	92503696	92790108
EVI5_chr1_92503696_92790108	0/0	t0017	5292	3	3	0	0	0	0	copy fasta	EVI5	chr1	92503696	92790108
EVI5_chr1_92503696_92790108	0/0	t0018	5291	3	2	0	1	0	0	copy fasta	EVI5	chr1	92503696	92790108
EVI5_chr1_92503696_92790108	0/0	t0019	5283	3	1	1	0	1	0	copy fasta	EVI5	chr1	92503696	92790108
EVI5_chr1_92503696_92790108	0/0	t0020	5281	2	2	0	0	0	0	copy fasta	EVI5	chr1	92503696	92790108
EVI5_chr1_92503696_92790108	0/0	t0021	5319	2	0	1	0	1	0	copy fasta	EVI5	chr1	92503696	92790108
EVI5_chr1_92503696_92790108	0/0	t0022	5286	2	2	0	0	0	0	copy fasta	EVI5	chr1	92503696	92790108
EVI5_chr1_92503696_92790108	0/0	t0023	5281	2	2	0	0	0	0	copy fasta	EVI5	chr1	92503696	92790108
EVI5_chr1_92503696_92790108	0/0	t0024	5291	2	2	0	0	0	0	copy fasta	EVI5	chr1	92503696	92790108
EVI5_chr1_92503696_92790108	0/0	t0025	5288	2	2	0	0	0	0	copy fasta	EVI5	chr1	92503696	92790108
EVI5_chr1_92503696_92790108	0/0	t0026	5287	2	2	0	0	0	0	copy fasta	EVI5	chr1	92503696	92790108
EVI5_chr1_92503696_92790108	0/0	t0027	5285	1	1	0	0	0	0	copy fasta	EVI5	chr1	92503696	92790108
EVI5_chr1_92503696_92790108	0/0	t0028	5281	1	1	0	0	0	0	copy fasta	EVI5	chr1	92503696	92790108
EVI5_chr1_92503696_92790108	0/0	t0029	5279	1	1	0	0	0	0	copy fasta	EVI5	chr1	92503696	92790108
EVI5_chr1_92503696_92790108	0/0	t0030	5321	1	0	0	0	1	0	copy fasta	EVI5	chr1	92503696	92790108
EVI5_chr1_92503696_92790108	0/0	t0031	5320	1	0	0	1	0	0	copy fasta	EVI5	chr1	92503696	92790108
EVI5_chr1_92503696_92790108	0/0	t0032	5315	1	0	0	0	0	1	copy fasta	EVI5	chr1	92503696	92790108
EVI5_chr1_92503696_92790108	0/0	t0033	5315	1	0	0	1	0	0	copy fasta	EVI5	chr1	92503696	92790108
EVI5_chr1_92503696_92790108	0/0	t0034	5305	1	0	0	1	0	0	copy fasta	EVI5	chr1	92503696	92790108
EVI5_chr1_92503696_92790108	0/0	t0035	5303	1	0	0	1	0	0	copy fasta	EVI5	chr1	92503696	92790108
EVI5_chr1_92503696_92790108	0/0	t0036	5297	1	1	0	0	0	0	copy fasta	EVI5	chr1	92503696	92790108
EVI5_chr1_92503696_92790108	0/0	t0037	5294	1	0	1	0	0	0	copy fasta	EVI5	chr1	92503696	92790108
EVI5_chr1_92503696_92790108	0/0	t0038	5291	1	1	0	0	0	0	copy fasta	EVI5	chr1	92503696	92790108
EVI5_chr1_92503696_92790108	0/0	t0039	5290	1	0	0	1	0	0	copy fasta	EVI5	chr1	92503696	92790108
EVI5_chr1_92503696_92790108	0/0	t0040	5295	1	1	0	0	0	0	copy fasta	EVI5	chr1	92503696	92790108
EVI5_chr1_92503696_92790108	0/0	t0041	5292	1	1	0	0	0	0	copy fasta	EVI5	chr1	92503696	92790108
EVI5_chr1_92503696_92790108	0/0	t0042	5291	1	0	0	1	0	0	copy fasta	EVI5	chr1	92503696	92790108
EVI5_chr1_92503696_92790108	0/0	t0043	5291	1	0	1	0	0	0	copy fasta	EVI5	chr1	92503696	92790108
EVI5_chr1_92503696_92790108	0/0	t0044	5289	1	1	0	0	0	0	copy fasta	EVI5	chr1	92503696	92790108
EVI5_chr1_92503696_92790108	0/0	t0045	5289	1	0	0	1	0	0	copy fasta	EVI5	chr1	92503696	92790108
EVI5_chr1_92503696_92790108	0/0	t0046	5286	1	0	1	0	0	0	copy fasta	EVI5	chr1	92503696	92790108
EVI5_chr1_92503696_92790108	0/0	t0047	5287	1	1	0	0	0	0	copy fasta	EVI5	chr1	92503696	92790108
EVI5_chr1_92503696_92790108	0/0	t0048	5285	1	1	0	0	0	0	copy fasta	EVI5	chr1	92503696	92790108
EVI5_chr1_92503696_92790108	0/0	t0049	5285	1	1	0	0	0	0	copy fasta	EVI5	chr1	92503696	92790108
EVI5_chr1_92503696_92790108	0/0	t0050	5285	1	1	0	0	0	0	copy fasta	EVI5	chr1	92503696	92790108