JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
EVI5_chr1_92503696_92790108	0/0	t0051	5283	1	0	0	0	0	1	copy fasta	EVI5	chr1	92503696	92790108
EVI5_chr1_92503696_92790108	0/0	t0052	5283	1	0	0	0	0	1	copy fasta	EVI5	chr1	92503696	92790108
EVI5_chr1_92503696_92790108	0/0	t0053	5283	1	0	1	0	0	0	copy fasta	EVI5	chr1	92503696	92790108
EVI5_chr1_92503696_92790108	0/0	t0054	5284	1	1	0	0	0	0	copy fasta	EVI5	chr1	92503696	92790108
EVI5_chr1_92503696_92790108	0/0	t0055	5281	1	1	0	0	0	0	copy fasta	EVI5	chr1	92503696	92790108
EVI5_chr1_92503696_92790108	0/0	t0056	5294	1	1	0	0	0	0	copy fasta	EVI5	chr1	92503696	92790108
EVI5_chr1_92503696_92790108	0/0	t0057	5287	1	1	0	0	0	0	copy fasta	EVI5	chr1	92503696	92790108
EVI5_chr1_92503696_92790108	0/0	t0058	5288	1	1	0	0	0	0	copy fasta	EVI5	chr1	92503696	92790108
EVI5_chr1_92503696_92790108	0/0	t0059	5283	1	0	0	0	1	0	copy fasta	EVI5	chr1	92503696	92790108
EVL_chr14_100060422_100149236	1/1	t0001	578	325	76	65	142	6	34	copy fasta	EVL	chr14	100060422	100149236
EVL_chr14_100060422_100149236	0/0	t0002	578	18	18	0	0	0	0	copy fasta	EVL	chr14	100060422	100149236
EVL_chr14_100060422_100149236	0/0	t0003	578	3	0	3	0	0	0	copy fasta	EVL	chr14	100060422	100149236
EVL_chr14_100060422_100149236	0/0	t0004	578	2	2	0	0	0	0	copy fasta	EVL	chr14	100060422	100149236
EVL_chr14_100060422_100149236	0/0	t0005	578	2	0	0	2	0	0	copy fasta	EVL	chr14	100060422	100149236
EVL_chr14_100060422_100149236	0/0	t0006	578	1	0	1	0	0	0	copy fasta	EVL	chr14	100060422	100149236
EVL_chr14_100060422_100149236	0/0	t0007	578	1	0	1	0	0	0	copy fasta	EVL	chr14	100060422	100149236
EVL_chr14_100060422_100149236	0/0	t0008	578	1	0	0	1	0	0	copy fasta	EVL	chr14	100060422	100149236
EVL_chr14_100060422_100149236	0/0	t0009	578	1	0	0	1	0	0	copy fasta	EVL	chr14	100060422	100149236
EVPLL_chr17_18372778_18394647	1/1	t0001	1074	140	13	29	69	5	22	copy fasta	EVPLL	chr17	18372778	18394647
EVPLL_chr17_18372778_18394647	0/0	t0002	1074	97	38	31	9	7	12	copy fasta	EVPLL	chr17	18372778	18394647
EVPLL_chr17_18372778_18394647	0/0	t0003	1074	88	26	11	43	2	6	copy fasta	EVPLL	chr17	18372778	18394647
EVPLL_chr17_18372778_18394647	0/0	t0004	1074	48	2	4	41	0	1	copy fasta	EVPLL	chr17	18372778	18394647
EVPLL_chr17_18372778_18394647	0/0	t0005	1074	17	14	3	0	0	0	copy fasta	EVPLL	chr17	18372778	18394647
EVPLL_chr17_18372778_18394647	0/0	t0006	1074	3	3	0	0	0	0	copy fasta	EVPLL	chr17	18372778	18394647
EVPLL_chr17_18372778_18394647	0/0	t0007	1074	2	0	0	2	0	0	copy fasta	EVPLL	chr17	18372778	18394647
EVPLL_chr17_18372778_18394647	0/0	t0008	1074	1	0	0	1	0	0	copy fasta	EVPLL	chr17	18372778	18394647
EVPLL_chr17_18372778_18394647	0/0	t0009	1074	1	1	0	0	0	0	copy fasta	EVPLL	chr17	18372778	18394647
EVPLL_chr17_18372778_18394647	0/0	t0010	1074	1	1	0	0	0	0	copy fasta	EVPLL	chr17	18372778	18394647
EVPLL_chr17_18372778_18394647	0/0	t0011	1074	1	0	0	0	0	1	copy fasta	EVPLL	chr17	18372778	18394647
EVPLL_chr17_18372778_18394647	0/0	t0012	1074	1	1	0	0	0	0	copy fasta	EVPLL	chr17	18372778	18394647
EVPLL_chr17_18372778_18394647	0/0	t0013	1074	1	0	1	0	0	0	copy fasta	EVPLL	chr17	18372778	18394647
EVPLL_chr17_18372778_18394647	0/0	t0014	1074	1	0	0	1	0	0	copy fasta	EVPLL	chr17	18372778	18394647
EVPLL_chr17_18372778_18394647	0/0	t0015	1074	1	0	0	1	0	0	copy fasta	EVPLL	chr17	18372778	18394647
EVPLL_chr17_18372778_18394647	0/0	t0016	1074	1	0	0	1	0	0	copy fasta	EVPLL	chr17	18372778	18394647
EVPLL_chr17_18372778_18394647	0/0	t0017	1074	1	0	0	1	0	0	copy fasta	EVPLL	chr17	18372778	18394647
EVPLL_chr17_18372778_18394647	0/0	t0018	1074	1	0	0	1	0	0	copy fasta	EVPLL	chr17	18372778	18394647
EVPLL_chr17_18372778_18394647	0/0	t0019	1074	1	1	0	0	0	0	copy fasta	EVPLL	chr17	18372778	18394647
EVPLL_chr17_18372778_18394647	0/0	t0020	1074	1	0	1	0	0	0	copy fasta	EVPLL	chr17	18372778	18394647
EVPL_chr17_76001845_76032306	1/0	t0001	367	257	87	50	85	10	24	copy fasta	EVPL	chr17	76001845	76032306
EVPL_chr17_76001845_76032306	0/1	t0002	367	143	6	23	83	6	24	copy fasta	EVPL	chr17	76001845	76032306
EVPL_chr17_76001845_76032306	0/0	t0003	367	3	0	3	0	0	0	copy fasta	EVPL	chr17	76001845	76032306
EVPL_chr17_76001845_76032306	0/0	t0004	367	1	1	0	0	0	0	copy fasta	EVPL	chr17	76001845	76032306
EVX1_chr7_27237802_27252830	0/1	t0001	1635	207	29	51	87	9	30	copy fasta	EVX1	chr7	27237802	27252830
EVX1_chr7_27237802_27252830	0/0	t0002	1635	118	24	11	81	0	2	copy fasta	EVX1	chr7	27237802	27252830
EVX1_chr7_27237802_27252830	0/0	t0003	1635	19	15	3	0	1	0	copy fasta	EVX1	chr7	27237802	27252830
EVX1_chr7_27237802_27252830	0/0	t0004	1635	15	6	1	8	0	0	copy fasta	EVX1	chr7	27237802	27252830
EVX1_chr7_27237802_27252830	0/0	t0005	1635	9	5	4	0	0	0	copy fasta	EVX1	chr7	27237802	27252830
EVX1_chr7_27237802_27252830	0/0	t0006	1636	7	7	0	0	0	0	copy fasta	EVX1	chr7	27237802	27252830
EVX1_chr7_27237802_27252830	0/0	t0007	1635	5	0	0	5	0	0	copy fasta	EVX1	chr7	27237802	27252830
EVX1_chr7_27237802_27252830	0/0	t0008	1635	3	3	0	0	0	0	copy fasta	EVX1	chr7	27237802	27252830