JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
EVX1_chr7_27237802_27252830	0/0	t0009	1635	2	0	2	0	0	0	copy fasta	EVX1	chr7	27237802	27252830
EVX1_chr7_27237802_27252830	0/0	t0010	1635	2	2	0	0	0	0	copy fasta	EVX1	chr7	27237802	27252830
EVX1_chr7_27237802_27252830	0/0	t0011	1635	2	0	0	2	0	0	copy fasta	EVX1	chr7	27237802	27252830
EVX1_chr7_27237802_27252830	0/0	t0012	1635	1	1	0	0	0	0	copy fasta	EVX1	chr7	27237802	27252830
EVX1_chr7_27237802_27252830	0/0	t0013	1635	1	1	0	0	0	0	copy fasta	EVX1	chr7	27237802	27252830
EVX1_chr7_27237802_27252830	0/0	t0014	1635	1	1	0	0	0	0	copy fasta	EVX1	chr7	27237802	27252830
EVX1_chr7_27237802_27252830	0/0	t0015	1635	1	1	0	0	0	0	copy fasta	EVX1	chr7	27237802	27252830
EVX1_chr7_27237802_27252830	0/0	t0016	1635	1	0	0	1	0	0	copy fasta	EVX1	chr7	27237802	27252830
EVX1_chr7_27237802_27252830	0/0	t0017	1635	1	1	0	0	0	0	copy fasta	EVX1	chr7	27237802	27252830
EVX1_chr7_27237802_27252830	0/0	t0018	1635	1	1	0	0	0	0	copy fasta	EVX1	chr7	27237802	27252830
EVX1_chr7_27237802_27252830	1/0	t0019	1635	1	0	0	0	0	0	copy fasta	EVX1	chr7	27237802	27252830
EVX1_chr7_27237802_27252830	0/0	t0020	1636	1	1	0	0	0	0	copy fasta	EVX1	chr7	27237802	27252830
EVX2_chr2_176072472_176088962	0/1	t0001	2826	189	37	22	110	3	16	copy fasta	EVX2	chr2	176072472	176088962
EVX2_chr2_176072472_176088962	1/0	t0002	2822	159	12	37	88	8	13	copy fasta	EVX2	chr2	176072472	176088962
EVX2_chr2_176072472_176088962	0/0	t0003	2822	16	0	10	0	3	3	copy fasta	EVX2	chr2	176072472	176088962
EVX2_chr2_176072472_176088962	0/0	t0004	2826	9	9	0	0	0	0	copy fasta	EVX2	chr2	176072472	176088962
EVX2_chr2_176072472_176088962	0/0	t0005	2826	9	9	0	0	0	0	copy fasta	EVX2	chr2	176072472	176088962
EVX2_chr2_176072472_176088962	0/0	t0006	2826	7	7	0	0	0	0	copy fasta	EVX2	chr2	176072472	176088962
EVX2_chr2_176072472_176088962	0/0	t0007	2826	6	0	0	0	0	6	copy fasta	EVX2	chr2	176072472	176088962
EVX2_chr2_176072472_176088962	0/0	t0008	2826	6	6	0	0	0	0	copy fasta	EVX2	chr2	176072472	176088962
EVX2_chr2_176072472_176088962	0/0	t0009	2826	4	0	0	0	0	4	copy fasta	EVX2	chr2	176072472	176088962
EVX2_chr2_176072472_176088962	0/0	t0010	2826	3	3	0	0	0	0	copy fasta	EVX2	chr2	176072472	176088962
EVX2_chr2_176072472_176088962	0/0	t0011	2826	3	0	0	3	0	0	copy fasta	EVX2	chr2	176072472	176088962
EVX2_chr2_176072472_176088962	0/0	t0012	2826	3	0	1	0	0	2	copy fasta	EVX2	chr2	176072472	176088962
EVX2_chr2_176072472_176088962	0/0	t0013	2826	2	0	0	2	0	0	copy fasta	EVX2	chr2	176072472	176088962
EVX2_chr2_176072472_176088962	0/0	t0014	2826	2	2	0	0	0	0	copy fasta	EVX2	chr2	176072472	176088962
EVX2_chr2_176072472_176088962	0/0	t0015	2826	2	2	0	0	0	0	copy fasta	EVX2	chr2	176072472	176088962
EVX2_chr2_176072472_176088962	0/0	t0016	2826	2	2	0	0	0	0	copy fasta	EVX2	chr2	176072472	176088962
EVX2_chr2_176072472_176088962	0/0	t0017	2826	1	1	0	0	0	0	copy fasta	EVX2	chr2	176072472	176088962
EVX2_chr2_176072472_176088962	0/0	t0018	2826	1	0	0	1	0	0	copy fasta	EVX2	chr2	176072472	176088962
EVX2_chr2_176072472_176088962	0/0	t0019	2826	1	0	0	1	0	0	copy fasta	EVX2	chr2	176072472	176088962
EVX2_chr2_176072472_176088962	0/0	t0020	2826	1	0	0	1	0	0	copy fasta	EVX2	chr2	176072472	176088962
EVX2_chr2_176072472_176088962	0/0	t0021	2822	1	0	0	1	0	0	copy fasta	EVX2	chr2	176072472	176088962
EVX2_chr2_176072472_176088962	0/0	t0022	2826	1	1	0	0	0	0	copy fasta	EVX2	chr2	176072472	176088962
EVX2_chr2_176072472_176088962	0/0	t0023	2826	1	0	0	1	0	0	copy fasta	EVX2	chr2	176072472	176088962
EVX2_chr2_176072472_176088962	0/0	t0024	2826	1	1	0	0	0	0	copy fasta	EVX2	chr2	176072472	176088962
EWSR1_chr22_29263268_29305521	1/1	t0001	430	382	93	60	175	12	40	copy fasta	EWSR1	chr22	29263268	29305521
EWSR1_chr22_29263268_29305521	0/0	t0002	430	3	2	1	0	0	0	copy fasta	EWSR1	chr22	29263268	29305521
EWSR1_chr22_29263268_29305521	0/0	t0003	430	2	0	0	0	0	2	copy fasta	EWSR1	chr22	29263268	29305521
EWSR1_chr22_29263268_29305521	0/0	t0004	430	1	0	1	0	0	0	copy fasta	EWSR1	chr22	29263268	29305521
EWSR1_chr22_29263268_29305521	0/0	t0005	430	1	1	0	0	0	0	copy fasta	EWSR1	chr22	29263268	29305521
EWSR1_chr22_29263268_29305521	0/0	t0006	430	1	0	0	1	0	0	copy fasta	EWSR1	chr22	29263268	29305521
EXD1_chr15_41177728_41235757	0/1	t0001	1536	176	45	43	59	7	21	copy fasta	EXD1	chr15	41177728	41235757
EXD1_chr15_41177728_41235757	0/0	t0002	1537	65	17	10	24	2	12	copy fasta	EXD1	chr15	41177728	41235757
EXD1_chr15_41177728_41235757	0/0	t0003	1536	40	1	4	33	1	1	copy fasta	EXD1	chr15	41177728	41235757
EXD1_chr15_41177728_41235757	0/0	t0004	1536	22	21	0	0	0	1	copy fasta	EXD1	chr15	41177728	41235757
EXD1_chr15_41177728_41235757	0/0	t0005	1536	4	4	0	0	0	0	copy fasta	EXD1	chr15	41177728	41235757
EXD1_chr15_41177728_41235757	0/0	t0006	1536	2	2	0	0	0	0	copy fasta	EXD1	chr15	41177728	41235757
EXD1_chr15_41177728_41235757	1/0	t0007	1536	1	0	0	0	0	0	copy fasta	EXD1	chr15	41177728	41235757
EXD1_chr15_41177728_41235757	0/0	t0008	1536	1	0	0	1	0	0	copy fasta	EXD1	chr15	41177728	41235757