JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
EXD1_chr15_41177728_41235757	0/0	t0009	1536	1	0	0	1	0	0	copy fasta	EXD1	chr15	41177728	41235757
EXD1_chr15_41177728_41235757	0/0	t0010	1536	1	0	1	0	0	0	copy fasta	EXD1	chr15	41177728	41235757
EXD1_chr15_41177728_41235757	0/0	t0011	1536	1	1	0	0	0	0	copy fasta	EXD1	chr15	41177728	41235757
EXD1_chr15_41177728_41235757	0/0	t0012	1536	1	1	0	0	0	0	copy fasta	EXD1	chr15	41177728	41235757
EXD1_chr15_41177728_41235757	0/0	t0013	1536	1	0	0	0	0	1	copy fasta	EXD1	chr15	41177728	41235757
EXD1_chr15_41177728_41235757	0/0	t0014	1536	1	1	0	0	0	0	copy fasta	EXD1	chr15	41177728	41235757
EXD1_chr15_41177728_41235757	0/0	t0015	1536	1	1	0	0	0	0	copy fasta	EXD1	chr15	41177728	41235757
EXD2_chr14_69186498_69249018	1/1	t0001	3144	100	15	28	27	8	20	copy fasta	EXD2	chr14	69186498	69249018
EXD2_chr14_69186498_69249018	0/0	t0002	3144	50	15	16	1	3	15	copy fasta	EXD2	chr14	69186498	69249018
EXD2_chr14_69186498_69249018	0/0	t0003	3144	22	20	2	0	0	0	copy fasta	EXD2	chr14	69186498	69249018
EXD2_chr14_69186498_69249018	0/0	t0004	3144	16	12	3	0	0	1	copy fasta	EXD2	chr14	69186498	69249018
EXD2_chr14_69186498_69249018	0/0	t0005	3144	11	1	3	4	3	0	copy fasta	EXD2	chr14	69186498	69249018
EXD2_chr14_69186498_69249018	0/0	t0006	3144	10	10	0	0	0	0	copy fasta	EXD2	chr14	69186498	69249018
EXD2_chr14_69186498_69249018	0/0	t0007	3144	5	3	2	0	0	0	copy fasta	EXD2	chr14	69186498	69249018
EXD2_chr14_69186498_69249018	0/0	t0008	3144	3	3	0	0	0	0	copy fasta	EXD2	chr14	69186498	69249018
EXD2_chr14_69186498_69249018	0/0	t0009	3144	2	2	0	0	0	0	copy fasta	EXD2	chr14	69186498	69249018
EXD2_chr14_69186498_69249018	0/0	t0010	3144	2	2	0	0	0	0	copy fasta	EXD2	chr14	69186498	69249018
EXD2_chr14_69186498_69249018	0/0	t0011	3144	2	2	0	0	0	0	copy fasta	EXD2	chr14	69186498	69249018
EXD2_chr14_69186498_69249018	0/0	t0012	3142	2	0	0	0	0	2	copy fasta	EXD2	chr14	69186498	69249018
EXD2_chr14_69186498_69249018	0/0	t0013	3144	1	1	0	0	0	0	copy fasta	EXD2	chr14	69186498	69249018
EXD2_chr14_69186498_69249018	0/0	t0014	3144	1	1	0	0	0	0	copy fasta	EXD2	chr14	69186498	69249018
EXD2_chr14_69186498_69249018	0/0	t0015	3144	1	0	0	0	0	1	copy fasta	EXD2	chr14	69186498	69249018
EXD2_chr14_69186498_69249018	0/0	t0016	3144	1	1	0	0	0	0	copy fasta	EXD2	chr14	69186498	69249018
EXD2_chr14_69186498_69249018	0/0	t0017	3144	1	1	0	0	0	0	copy fasta	EXD2	chr14	69186498	69249018
EXD2_chr14_69186498_69249018	0/0	t0018	3144	1	1	0	0	0	0	copy fasta	EXD2	chr14	69186498	69249018
EXD2_chr14_69186498_69249018	0/0	t0019	3144	1	1	0	0	0	0	copy fasta	EXD2	chr14	69186498	69249018
EXD2_chr14_69186498_69249018	0/0	t0020	3144	1	0	0	0	0	1	copy fasta	EXD2	chr14	69186498	69249018
EXD2_chr14_69186498_69249018	0/0	t0021	3144	1	1	0	0	0	0	copy fasta	EXD2	chr14	69186498	69249018
EXD3_chr9_137301896_137428162	1/1	t0001	151	81	32	14	15	6	12	copy fasta	EXD3	chr9	137301896	137428162
EXD3_chr9_137301896_137428162	0/0	t0002	151	1	0	0	1	0	0	copy fasta	EXD3	chr9	137301896	137428162
EXO1_chr1_241843204_241894939	0/0	t0001	909	99	24	23	38	6	8	copy fasta	EXO1	chr1	241843204	241894939
EXO1_chr1_241843204_241894939	0/1	t0002	908	85	11	12	56	0	5	copy fasta	EXO1	chr1	241843204	241894939
EXO1_chr1_241843204_241894939	0/0	t0003	909	62	5	27	15	6	9	copy fasta	EXO1	chr1	241843204	241894939
EXO1_chr1_241843204_241894939	1/0	t0004	909	37	11	0	21	0	4	copy fasta	EXO1	chr1	241843204	241894939
EXO1_chr1_241843204_241894939	0/0	t0005	909	37	5	7	20	2	3	copy fasta	EXO1	chr1	241843204	241894939
EXO1_chr1_241843204_241894939	0/0	t0006	908	18	0	6	9	3	0	copy fasta	EXO1	chr1	241843204	241894939
EXO1_chr1_241843204_241894939	0/0	t0007	909	17	8	1	6	0	2	copy fasta	EXO1	chr1	241843204	241894939
EXO1_chr1_241843204_241894939	0/0	t0008	909	14	0	0	6	0	8	copy fasta	EXO1	chr1	241843204	241894939
EXO1_chr1_241843204_241894939	0/0	t0009	908	8	0	1	6	0	1	copy fasta	EXO1	chr1	241843204	241894939
EXO1_chr1_241843204_241894939	0/0	t0010	909	6	3	1	0	0	2	copy fasta	EXO1	chr1	241843204	241894939
EXO1_chr1_241843204_241894939	0/0	t0011	909	5	5	0	0	0	0	copy fasta	EXO1	chr1	241843204	241894939
EXO1_chr1_241843204_241894939	0/0	t0012	909	4	3	0	1	0	0	copy fasta	EXO1	chr1	241843204	241894939
EXO1_chr1_241843204_241894939	0/0	t0013	909	4	3	1	0	0	0	copy fasta	EXO1	chr1	241843204	241894939
EXO1_chr1_241843204_241894939	0/0	t0014	909	3	3	0	0	0	0	copy fasta	EXO1	chr1	241843204	241894939
EXO1_chr1_241843204_241894939	0/0	t0015	909	3	3	0	0	0	0	copy fasta	EXO1	chr1	241843204	241894939
EXO1_chr1_241843204_241894939	0/0	t0016	909	2	2	0	0	0	0	copy fasta	EXO1	chr1	241843204	241894939
EXO1_chr1_241843204_241894939	0/0	t0017	909	2	2	0	0	0	0	copy fasta	EXO1	chr1	241843204	241894939
EXO1_chr1_241843204_241894939	0/0	t0018	909	2	2	0	0	0	0	copy fasta	EXO1	chr1	241843204	241894939
EXO1_chr1_241843204_241894939	0/0	t0019	909	2	2	0	0	0	0	copy fasta	EXO1	chr1	241843204	241894939
EXO1_chr1_241843204_241894939	0/0	t0020	909	2	0	0	0	0	2	copy fasta	EXO1	chr1	241843204	241894939