Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
AIFM2_chr10_70107271_70137825	0/0	t0035	2007	1	1	0	0	0	0	copy fasta	AIFM2	chr10	70107271	70137825
AIFM2_chr10_70107271_70137825	0/0	t0036	2007	1	1	0	0	0	0	copy fasta	AIFM2	chr10	70107271	70137825
AIFM2_chr10_70107271_70137825	0/0	t0037	2007	1	0	0	1	0	0	copy fasta	AIFM2	chr10	70107271	70137825
AIFM2_chr10_70107271_70137825	0/0	t0038	2007	1	1	0	0	0	0	copy fasta	AIFM2	chr10	70107271	70137825
AIFM2_chr10_70107271_70137825	0/0	t0039	2007	1	0	0	1	0	0	copy fasta	AIFM2	chr10	70107271	70137825
AIFM2_chr10_70107271_70137825	0/0	t0040	2013	1	0	0	0	0	1	copy fasta	AIFM2	chr10	70107271	70137825
AIFM2_chr10_70107271_70137825	0/0	t0041	2013	1	0	1	0	0	0	copy fasta	AIFM2	chr10	70107271	70137825
AIFM2_chr10_70107271_70137825	0/0	t0042	2013	1	0	0	1	0	0	copy fasta	AIFM2	chr10	70107271	70137825
AIFM2_chr10_70107271_70137825	0/0	t0043	2013	1	0	0	0	1	0	copy fasta	AIFM2	chr10	70107271	70137825
AIFM2_chr10_70107271_70137825	0/0	t0044	2013	1	1	0	0	0	0	copy fasta	AIFM2	chr10	70107271	70137825
AIFM2_chr10_70107271_70137825	0/0	t0045	2013	1	1	0	0	0	0	copy fasta	AIFM2	chr10	70107271	70137825
AIFM2_chr10_70107271_70137825	0/0	t0046	2013	1	1	0	0	0	0	copy fasta	AIFM2	chr10	70107271	70137825
AIFM2_chr10_70107271_70137825	0/0	t0047	2013	1	0	0	1	0	0	copy fasta	AIFM2	chr10	70107271	70137825
AIFM2_chr10_70107271_70137825	0/0	t0048	2019	1	0	0	1	0	0	copy fasta	AIFM2	chr10	70107271	70137825
AIFM2_chr10_70107271_70137825	0/0	t0049	2019	1	0	0	0	0	1	copy fasta	AIFM2	chr10	70107271	70137825
AIFM2_chr10_70107271_70137825	0/0	t0050	2019	1	1	0	0	0	0	copy fasta	AIFM2	chr10	70107271	70137825
AIFM2_chr10_70107271_70137825	0/0	t0051	2019	1	0	0	0	0	1	copy fasta	AIFM2	chr10	70107271	70137825
AIFM2_chr10_70107271_70137825	0/0	t0052	2019	1	0	0	1	0	0	copy fasta	AIFM2	chr10	70107271	70137825
AIFM2_chr10_70107271_70137825	0/0	t0053	2025	1	0	0	1	0	0	copy fasta	AIFM2	chr10	70107271	70137825
AIFM2_chr10_70107271_70137825	0/0	t0054	2025	1	1	0	0	0	0	copy fasta	AIFM2	chr10	70107271	70137825
AIFM2_chr10_70107271_70137825	0/0	t0055	2031	1	1	0	0	0	0	copy fasta	AIFM2	chr10	70107271	70137825
AIFM2_chr10_70107271_70137825	0/0	t0056	2031	1	1	0	0	0	0	copy fasta	AIFM2	chr10	70107271	70137825
AIFM2_chr10_70107271_70137825	0/0	t0057	2037	1	1	0	0	0	0	copy fasta	AIFM2	chr10	70107271	70137825
AIFM2_chr10_70107271_70137825	0/0	t0058	2013	1	0	1	0	0	0	copy fasta	AIFM2	chr10	70107271	70137825
AIFM2_chr10_70107271_70137825	0/0	t0059	2013	1	1	0	0	0	0	copy fasta	AIFM2	chr10	70107271	70137825
AIFM3_chr22_20962255_20986358	0/1	t0001	517	342	61	64	160	18	38	copy fasta	AIFM3	chr22	20962255	20986358
AIFM3_chr22_20962255_20986358	0/0	t0002	517	52	2	11	35	0	4	copy fasta	AIFM3	chr22	20962255	20986358
AIFM3_chr22_20962255_20986358	0/0	t0003	517	30	26	4	0	0	0	copy fasta	AIFM3	chr22	20962255	20986358
AIFM3_chr22_20962255_20986358	1/0	t0004	517	13	0	2	10	0	0	copy fasta	AIFM3	chr22	20962255	20986358
AIFM3_chr22_20962255_20986358	0/0	t0005	517	13	8	1	0	0	4	copy fasta	AIFM3	chr22	20962255	20986358
AIFM3_chr22_20962255_20986358	0/0	t0006	517	2	1	0	1	0	0	copy fasta	AIFM3	chr22	20962255	20986358
AIFM3_chr22_20962255_20986358	0/0	t0007	517	1	1	0	0	0	0	copy fasta	AIFM3	chr22	20962255	20986358
AIFM3_chr22_20962255_20986358	0/0	t0008	517	1	0	0	1	0	0	copy fasta	AIFM3	chr22	20962255	20986358
AIFM3_chr22_20962255_20986358	0/0	t0009	517	1	1	0	0	0	0	copy fasta	AIFM3	chr22	20962255	20986358
AIFM3_chr22_20962255_20986358	0/0	t0010	517	1	0	0	1	0	0	copy fasta	AIFM3	chr22	20962255	20986358
AIG1_chr6_143055889_143346058	0/0	t0001	1421	66	23	2	36	0	5	copy fasta	AIG1	chr6	143055889	143346058
AIG1_chr6_143055889_143346058	0/0	t0002	1420	39	6	2	24	1	6	copy fasta	AIG1	chr6	143055889	143346058
AIG1_chr6_143055889_143346058	0/0	t0003	1421	38	8	7	19	0	4	copy fasta	AIG1	chr6	143055889	143346058
AIG1_chr6_143055889_143346058	0/0	t0004	1421	18	16	2	0	0	0	copy fasta	AIG1	chr6	143055889	143346058
AIG1_chr6_143055889_143346058	0/0	t0005	1421	15	14	1	0	0	0	copy fasta	AIG1	chr6	143055889	143346058
AIG1_chr6_143055889_143346058	1/1	t0006	1420	12	3	3	0	1	3	copy fasta	AIG1	chr6	143055889	143346058
AIG1_chr6_143055889_143346058	0/0	t0007	1417	6	0	3	3	0	0	copy fasta	AIG1	chr6	143055889	143346058
AIG1_chr6_143055889_143346058	0/0	t0008	1421	5	5	0	0	0	0	copy fasta	AIG1	chr6	143055889	143346058
AIG1_chr6_143055889_143346058	0/0	t0009	1421	2	2	0	0	0	0	copy fasta	AIG1	chr6	143055889	143346058
AIG1_chr6_143055889_143346058	0/0	t0010	1420	2	2	0	0	0	0	copy fasta	AIG1	chr6	143055889	143346058
AIG1_chr6_143055889_143346058	0/0	t0011	1421	1	1	0	0	0	0	copy fasta	AIG1	chr6	143055889	143346058
AIM2_chr1_159057484_159081766	1/1	t0001	363	325	87	58	136	14	28	copy fasta	AIM2	chr1	159057484	159081766
AIM2_chr1_159057484_159081766	0/0	t0002	363	69	5	0	52	0	12	copy fasta	AIM2	chr1	159057484	159081766
AIMP1_chr4_106311550_106354456	1/1	t0001	1835	186	59	35	60	12	18	copy fasta	AIMP1	chr4	106311550	106354456
AIMP1_chr4_106311550_106354456	0/0	t0002	1835	76	1	14	56	0	5	copy fasta	AIMP1	chr4	106311550	106354456