JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
EXO1_chr1_241843204_241894939	0/0	t0021	908	1	0	0	0	1	0	copy fasta	EXO1	chr1	241843204	241894939
EXO1_chr1_241843204_241894939	0/0	t0022	909	1	1	0	0	0	0	copy fasta	EXO1	chr1	241843204	241894939
EXO1_chr1_241843204_241894939	0/0	t0023	909	1	0	1	0	0	0	copy fasta	EXO1	chr1	241843204	241894939
EXO1_chr1_241843204_241894939	0/0	t0024	909	1	1	0	0	0	0	copy fasta	EXO1	chr1	241843204	241894939
EXO5_chr1_40503767_40521038	0/1	t0001	778	207	54	41	80	8	23	copy fasta	EXO5	chr1	40503767	40521038
EXO5_chr1_40503767_40521038	1/0	t0002	778	175	31	33	90	8	12	copy fasta	EXO5	chr1	40503767	40521038
EXO5_chr1_40503767_40521038	0/0	t0003	778	15	0	1	13	0	1	copy fasta	EXO5	chr1	40503767	40521038
EXO5_chr1_40503767_40521038	0/0	t0004	778	2	2	0	0	0	0	copy fasta	EXO5	chr1	40503767	40521038
EXO5_chr1_40503767_40521038	0/0	t0005	778	2	1	1	0	0	0	copy fasta	EXO5	chr1	40503767	40521038
EXO5_chr1_40503767_40521038	0/0	t0006	778	1	1	0	0	0	0	copy fasta	EXO5	chr1	40503767	40521038
EXO5_chr1_40503767_40521038	0/0	t0007	778	1	0	0	0	0	1	copy fasta	EXO5	chr1	40503767	40521038
EXO5_chr1_40503767_40521038	0/0	t0008	376	1	0	0	1	0	0	copy fasta	EXO5	chr1	40503767	40521038
EXO5_chr1_40503767_40521038	0/0	t0009	778	1	0	0	0	0	1	copy fasta	EXO5	chr1	40503767	40521038
EXO5_chr1_40503767_40521038	0/0	t0010	778	1	1	0	0	0	0	copy fasta	EXO5	chr1	40503767	40521038
EXOC1L_chr4_55814790_55842489	1/1	t0001	376	372	90	67	161	12	40	copy fasta	EXOC1L	chr4	55814790	55842489
EXOC1L_chr4_55814790_55842489	0/0	t0002	376	28	2	13	11	0	2	copy fasta	EXOC1L	chr4	55814790	55842489
EXOC1L_chr4_55814790_55842489	0/0	t0003	376	4	4	0	0	0	0	copy fasta	EXOC1L	chr4	55814790	55842489
EXOC1_chr4_55848648_55910086	1/1	t0001	908	239	63	44	90	9	31	copy fasta	EXOC1	chr4	55848648	55910086
EXOC1_chr4_55848648_55910086	0/0	t0002	908	88	7	10	63	1	7	copy fasta	EXOC1	chr4	55848648	55910086
EXOC1_chr4_55848648_55910086	0/0	t0003	908	30	6	13	10	0	1	copy fasta	EXOC1	chr4	55848648	55910086
EXOC1_chr4_55848648_55910086	0/0	t0004	908	12	8	2	1	0	1	copy fasta	EXOC1	chr4	55848648	55910086
EXOC1_chr4_55848648_55910086	0/0	t0005	908	3	3	0	0	0	0	copy fasta	EXOC1	chr4	55848648	55910086
EXOC1_chr4_55848648_55910086	0/0	t0006	908	2	0	2	0	0	0	copy fasta	EXOC1	chr4	55848648	55910086
EXOC1_chr4_55848648_55910086	0/0	t0007	908	1	0	1	0	0	0	copy fasta	EXOC1	chr4	55848648	55910086
EXOC1_chr4_55848648_55910086	0/0	t0008	908	1	1	0	0	0	0	copy fasta	EXOC1	chr4	55848648	55910086
EXOC2_chr6_480154_698139	0/0	t0001	1682	90	4	19	49	7	11	copy fasta	EXOC2	chr6	480154	698139
EXOC2_chr6_480154_698139	0/0	t0002	1682	52	35	4	5	3	5	copy fasta	EXOC2	chr6	480154	698139
EXOC2_chr6_480154_698139	0/0	t0003	1682	41	21	5	6	0	9	copy fasta	EXOC2	chr6	480154	698139
EXOC2_chr6_480154_698139	0/0	t0004	1682	25	1	3	20	0	1	copy fasta	EXOC2	chr6	480154	698139
EXOC2_chr6_480154_698139	0/0	t0005	1682	18	2	3	11	0	2	copy fasta	EXOC2	chr6	480154	698139
EXOC2_chr6_480154_698139	0/0	t0006	1682	7	0	0	6	0	1	copy fasta	EXOC2	chr6	480154	698139
EXOC2_chr6_480154_698139	0/0	t0007	1682	6	6	0	0	0	0	copy fasta	EXOC2	chr6	480154	698139
EXOC2_chr6_480154_698139	1/0	t0008	1682	4	2	1	0	0	0	copy fasta	EXOC2	chr6	480154	698139
EXOC2_chr6_480154_698139	0/0	t0009	1682	4	4	0	0	0	0	copy fasta	EXOC2	chr6	480154	698139
EXOC2_chr6_480154_698139	0/0	t0010	1682	4	0	0	4	0	0	copy fasta	EXOC2	chr6	480154	698139
EXOC2_chr6_480154_698139	0/0	t0011	1682	3	3	0	0	0	0	copy fasta	EXOC2	chr6	480154	698139
EXOC2_chr6_480154_698139	0/0	t0012	1682	2	0	0	2	0	0	copy fasta	EXOC2	chr6	480154	698139
EXOC2_chr6_480154_698139	0/0	t0013	1682	2	2	0	0	0	0	copy fasta	EXOC2	chr6	480154	698139
EXOC2_chr6_480154_698139	0/0	t0014	1682	1	0	1	0	0	0	copy fasta	EXOC2	chr6	480154	698139
EXOC2_chr6_480154_698139	0/0	t0015	1682	1	0	0	1	0	0	copy fasta	EXOC2	chr6	480154	698139
EXOC2_chr6_480154_698139	0/0	t0016	1682	1	1	0	0	0	0	copy fasta	EXOC2	chr6	480154	698139
EXOC2_chr6_480154_698139	0/0	t0017	1682	1	1	0	0	0	0	copy fasta	EXOC2	chr6	480154	698139
EXOC2_chr6_480154_698139	0/0	t0018	1682	1	0	0	0	1	0	copy fasta	EXOC2	chr6	480154	698139
EXOC2_chr6_480154_698139	0/0	t0019	1682	1	1	0	0	0	0	copy fasta	EXOC2	chr6	480154	698139
EXOC2_chr6_480154_698139	0/0	t0020	1682	1	0	0	1	0	0	copy fasta	EXOC2	chr6	480154	698139
EXOC2_chr6_480154_698139	0/0	t0021	1682	1	0	0	1	0	0	copy fasta	EXOC2	chr6	480154	698139
EXOC2_chr6_480154_698139	0/0	t0022	1682	1	0	0	0	1	0	copy fasta	EXOC2	chr6	480154	698139
EXOC2_chr6_480154_698139	0/1	t0023	1682	1	0	0	0	0	0	copy fasta	EXOC2	chr6	480154	698139
EXOC2_chr6_480154_698139	0/0	t0024	1682	1	1	0	0	0	0	copy fasta	EXOC2	chr6	480154	698139
EXOC2_chr6_480154_698139	0/0	t0025	1682	1	1	0	0	0	0	copy fasta	EXOC2	chr6	480154	698139