JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
EXOC2_chr6_480154_698139	0/0	t0026	1682	1	0	0	0	0	1	copy fasta	EXOC2	chr6	480154	698139
EXOC2_chr6_480154_698139	0/0	t0027	1682	1	1	0	0	0	0	copy fasta	EXOC2	chr6	480154	698139
EXOC3L1_chr16_67179379_67195136	1/1	t0001	189	310	93	64	109	12	30	copy fasta	EXOC3L1	chr16	67179379	67195136
EXOC3L1_chr16_67179379_67195136	0/0	t0002	189	2	2	0	0	0	0	copy fasta	EXOC3L1	chr16	67179379	67195136
EXOC3L1_chr16_67179379_67195136	0/0	t0003	189	1	0	0	1	0	0	copy fasta	EXOC3L1	chr16	67179379	67195136
EXOC3L1_chr16_67179379_67195136	0/0	t0004	189	1	1	0	0	0	0	copy fasta	EXOC3L1	chr16	67179379	67195136
EXOC3L2_chr19_45207370_45250407	1/1	t0001	783	196	39	42	75	11	27	copy fasta	EXOC3L2	chr19	45207370	45250407
EXOC3L2_chr19_45207370_45250407	0/0	t0002	785	67	26	6	32	1	2	copy fasta	EXOC3L2	chr19	45207370	45250407
EXOC3L2_chr19_45207370_45250407	0/0	t0003	780	37	1	12	14	4	6	copy fasta	EXOC3L2	chr19	45207370	45250407
EXOC3L2_chr19_45207370_45250407	0/0	t0004	784	30	17	4	8	0	1	copy fasta	EXOC3L2	chr19	45207370	45250407
EXOC3L2_chr19_45207370_45250407	0/0	t0005	782	11	3	2	5	0	1	copy fasta	EXOC3L2	chr19	45207370	45250407
EXOC3L2_chr19_45207370_45250407	0/0	t0006	783	4	0	1	0	0	3	copy fasta	EXOC3L2	chr19	45207370	45250407
EXOC3L2_chr19_45207370_45250407	0/0	t0007	783	3	0	2	1	0	0	copy fasta	EXOC3L2	chr19	45207370	45250407
EXOC3L2_chr19_45207370_45250407	0/0	t0008	784	3	3	0	0	0	0	copy fasta	EXOC3L2	chr19	45207370	45250407
EXOC3L2_chr19_45207370_45250407	0/0	t0009	785	1	0	1	0	0	0	copy fasta	EXOC3L2	chr19	45207370	45250407
EXOC3L2_chr19_45207370_45250407	0/0	t0010	782	1	0	0	1	0	0	copy fasta	EXOC3L2	chr19	45207370	45250407
EXOC3L2_chr19_45207370_45250407	0/0	t0011	783	1	0	0	1	0	0	copy fasta	EXOC3L2	chr19	45207370	45250407
EXOC3L2_chr19_45207370_45250407	0/0	t0012	780	1	0	0	1	0	0	copy fasta	EXOC3L2	chr19	45207370	45250407
EXOC3L2_chr19_45207370_45250407	0/0	t0013	783	1	1	0	0	0	0	copy fasta	EXOC3L2	chr19	45207370	45250407
EXOC3L4_chr14_103089725_103115559	0/0	t0001	468	220	87	39	56	11	27	copy fasta	EXOC3L4	chr14	103089725	103115559
EXOC3L4_chr14_103089725_103115559	0/1	t0002	468	87	0	22	57	3	4	copy fasta	EXOC3L4	chr14	103089725	103115559
EXOC3L4_chr14_103089725_103115559	1/0	t0003	469	81	3	17	40	2	18	copy fasta	EXOC3L4	chr14	103089725	103115559
EXOC3L4_chr14_103089725_103115559	0/0	t0004	469	4	1	0	3	0	0	copy fasta	EXOC3L4	chr14	103089725	103115559
EXOC3L4_chr14_103089725_103115559	0/0	t0005	469	3	0	1	2	0	0	copy fasta	EXOC3L4	chr14	103089725	103115559
EXOC3L4_chr14_103089725_103115559	0/0	t0006	468	2	0	0	2	0	0	copy fasta	EXOC3L4	chr14	103089725	103115559
EXOC3L4_chr14_103089725_103115559	0/0	t0007	468	2	2	0	0	0	0	copy fasta	EXOC3L4	chr14	103089725	103115559
EXOC3L4_chr14_103089725_103115559	0/0	t0008	468	2	1	1	0	0	0	copy fasta	EXOC3L4	chr14	103089725	103115559
EXOC3L4_chr14_103089725_103115559	0/0	t0009	468	2	2	0	0	0	0	copy fasta	EXOC3L4	chr14	103089725	103115559
EXOC3L4_chr14_103089725_103115559	0/0	t0010	468	1	0	0	0	0	1	copy fasta	EXOC3L4	chr14	103089725	103115559
EXOC3_chr5_438176_472290	0/0	t0001	543	155	45	23	62	6	19	copy fasta	EXOC3	chr5	438176	472290
EXOC3_chr5_438176_472290	0/0	t0002	543	38	22	10	5	1	0	copy fasta	EXOC3	chr5	438176	472290
EXOC3_chr5_438176_472290	1/0	t0003	564	33	0	5	24	0	3	copy fasta	EXOC3	chr5	438176	472290
EXOC3_chr5_438176_472290	0/0	t0004	531	33	2	12	13	2	4	copy fasta	EXOC3	chr5	438176	472290
EXOC3_chr5_438176_472290	0/0	t0005	549	23	3	3	14	0	3	copy fasta	EXOC3	chr5	438176	472290
EXOC3_chr5_438176_472290	0/0	t0006	525	21	0	11	0	3	7	copy fasta	EXOC3	chr5	438176	472290
EXOC3_chr5_438176_472290	0/0	t0007	567	19	0	3	13	0	3	copy fasta	EXOC3	chr5	438176	472290
EXOC3_chr5_438176_472290	0/1	t0008	525	16	0	3	0	4	8	copy fasta	EXOC3	chr5	438176	472290
EXOC3_chr5_438176_472290	0/0	t0009	561	12	1	2	8	0	1	copy fasta	EXOC3	chr5	438176	472290
EXOC3_chr5_438176_472290	0/0	t0010	570	9	0	0	9	0	0	copy fasta	EXOC3	chr5	438176	472290
EXOC3_chr5_438176_472290	0/0	t0011	555	8	8	0	0	0	0	copy fasta	EXOC3	chr5	438176	472290
EXOC3_chr5_438176_472290	0/0	t0012	573	6	0	0	5	0	1	copy fasta	EXOC3	chr5	438176	472290
EXOC3_chr5_438176_472290	0/0	t0013	546	5	3	2	0	0	0	copy fasta	EXOC3	chr5	438176	472290
EXOC3_chr5_438176_472290	0/0	t0014	552	4	0	0	4	0	0	copy fasta	EXOC3	chr5	438176	472290
EXOC3_chr5_438176_472290	0/0	t0015	540	3	1	0	2	0	0	copy fasta	EXOC3	chr5	438176	472290
EXOC3_chr5_438176_472290	0/0	t0016	531	2	0	0	2	0	0	copy fasta	EXOC3	chr5	438176	472290
EXOC3_chr5_438176_472290	0/0	t0017	585	2	1	0	1	0	0	copy fasta	EXOC3	chr5	438176	472290
EXOC3_chr5_438176_472290	0/0	t0018	552	2	2	0	0	0	0	copy fasta	EXOC3	chr5	438176	472290
EXOC3_chr5_438176_472290	0/0	t0019	537	2	1	0	1	0	0	copy fasta	EXOC3	chr5	438176	472290
EXOC3_chr5_438176_472290	0/0	t0020	528	2	0	1	1	0	0	copy fasta	EXOC3	chr5	438176	472290
EXOC3_chr5_438176_472290	0/0	t0021	510	2	0	2	0	0	0	copy fasta	EXOC3	chr5	438176	472290