JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
EXOC3_chr5_438176_472290	0/0	t0022	528	2	0	0	2	0	0	copy fasta	EXOC3	chr5	438176	472290
EXOC3_chr5_438176_472290	0/0	t0023	594	1	0	0	0	1	0	copy fasta	EXOC3	chr5	438176	472290
EXOC3_chr5_438176_472290	0/0	t0024	564	1	0	0	1	0	0	copy fasta	EXOC3	chr5	438176	472290
EXOC3_chr5_438176_472290	0/0	t0025	561	1	0	0	1	0	0	copy fasta	EXOC3	chr5	438176	472290
EXOC3_chr5_438176_472290	0/0	t0026	579	1	0	1	0	0	0	copy fasta	EXOC3	chr5	438176	472290
EXOC3_chr5_438176_472290	0/0	t0027	543	1	0	0	1	0	0	copy fasta	EXOC3	chr5	438176	472290
EXOC3_chr5_438176_472290	0/0	t0028	525	1	0	1	0	0	0	copy fasta	EXOC3	chr5	438176	472290
EXOC3_chr5_438176_472290	0/0	t0029	519	1	0	0	1	0	0	copy fasta	EXOC3	chr5	438176	472290
EXOC3_chr5_438176_472290	0/0	t0030	702	1	0	0	1	0	0	copy fasta	EXOC3	chr5	438176	472290
EXOC3_chr5_438176_472290	0/0	t0031	618	1	0	0	1	0	0	copy fasta	EXOC3	chr5	438176	472290
EXOC3_chr5_438176_472290	0/0	t0032	609	1	0	0	1	0	0	copy fasta	EXOC3	chr5	438176	472290
EXOC3_chr5_438176_472290	0/0	t0033	591	1	0	0	1	0	0	copy fasta	EXOC3	chr5	438176	472290
EXOC3_chr5_438176_472290	0/0	t0034	579	1	0	0	1	0	0	copy fasta	EXOC3	chr5	438176	472290
EXOC3_chr5_438176_472290	0/0	t0035	576	1	0	0	1	0	0	copy fasta	EXOC3	chr5	438176	472290
EXOC3_chr5_438176_472290	0/0	t0036	564	1	0	0	0	0	1	copy fasta	EXOC3	chr5	438176	472290
EXOC3_chr5_438176_472290	0/0	t0037	564	1	0	0	0	1	0	copy fasta	EXOC3	chr5	438176	472290
EXOC3_chr5_438176_472290	0/0	t0038	543	1	1	0	0	0	0	copy fasta	EXOC3	chr5	438176	472290
EXOC3_chr5_438176_472290	0/0	t0039	534	1	0	0	1	0	0	copy fasta	EXOC3	chr5	438176	472290
EXOC3_chr5_438176_472290	0/0	t0040	561	1	0	0	1	0	0	copy fasta	EXOC3	chr5	438176	472290
EXOC3_chr5_438176_472290	0/0	t0041	531	1	0	1	0	0	0	copy fasta	EXOC3	chr5	438176	472290
EXOC4_chr7_133248078_134070761	0/0	t0001	1258	45	12	8	19	4	2	copy fasta	EXOC4	chr7	133248078	134070761
EXOC4_chr7_133248078_134070761	1/0	t0002	1258	17	5	1	8	0	2	copy fasta	EXOC4	chr7	133248078	134070761
EXOC4_chr7_133248078_134070761	0/0	t0003	1259	12	5	7	0	0	0	copy fasta	EXOC4	chr7	133248078	134070761
EXOC4_chr7_133248078_134070761	0/0	t0004	1258	5	5	0	0	0	0	copy fasta	EXOC4	chr7	133248078	134070761
EXOC4_chr7_133248078_134070761	0/0	t0005	1258	3	3	0	0	0	0	copy fasta	EXOC4	chr7	133248078	134070761
EXOC4_chr7_133248078_134070761	0/0	t0006	1258	3	2	1	0	0	0	copy fasta	EXOC4	chr7	133248078	134070761
EXOC4_chr7_133248078_134070761	0/0	t0007	1258	2	2	0	0	0	0	copy fasta	EXOC4	chr7	133248078	134070761
EXOC4_chr7_133248078_134070761	0/0	t0008	1258	2	1	0	1	0	0	copy fasta	EXOC4	chr7	133248078	134070761
EXOC4_chr7_133248078_134070761	0/1	t0009	1259	2	0	1	0	0	0	copy fasta	EXOC4	chr7	133248078	134070761
EXOC4_chr7_133248078_134070761	0/0	t0010	1259	2	2	0	0	0	0	copy fasta	EXOC4	chr7	133248078	134070761
EXOC4_chr7_133248078_134070761	0/0	t0011	1258	1	0	1	0	0	0	copy fasta	EXOC4	chr7	133248078	134070761
EXOC4_chr7_133248078_134070761	0/0	t0012	1258	1	1	0	0	0	0	copy fasta	EXOC4	chr7	133248078	134070761
EXOC4_chr7_133248078_134070761	0/0	t0013	1258	1	1	0	0	0	0	copy fasta	EXOC4	chr7	133248078	134070761
EXOC4_chr7_133248078_134070761	0/0	t0014	1258	1	1	0	0	0	0	copy fasta	EXOC4	chr7	133248078	134070761
EXOC4_chr7_133248078_134070761	0/0	t0015	1258	1	1	0	0	0	0	copy fasta	EXOC4	chr7	133248078	134070761
EXOC4_chr7_133248078_134070761	0/0	t0016	1258	1	0	1	0	0	0	copy fasta	EXOC4	chr7	133248078	134070761
EXOC4_chr7_133248078_134070761	0/0	t0017	1259	1	1	0	0	0	0	copy fasta	EXOC4	chr7	133248078	134070761
EXOC4_chr7_133248078_134070761	0/0	t0018	1259	1	1	0	0	0	0	copy fasta	EXOC4	chr7	133248078	134070761
EXOC4_chr7_133248078_134070761	0/0	t0019	1259	1	1	0	0	0	0	copy fasta	EXOC4	chr7	133248078	134070761
EXOC5_chr14_57195507_57273905	1/0	t0001	8360	45	5	19	10	4	6	copy fasta	EXOC5	chr14	57195507	57273905
EXOC5_chr14_57195507_57273905	0/0	t0002	8349	21	15	5	1	0	0	copy fasta	EXOC5	chr14	57195507	57273905
EXOC5_chr14_57195507_57273905	0/0	t0003	8358	19	5	3	8	0	3	copy fasta	EXOC5	chr14	57195507	57273905
EXOC5_chr14_57195507_57273905	0/0	t0004	8362	9	0	2	6	0	1	copy fasta	EXOC5	chr14	57195507	57273905
EXOC5_chr14_57195507_57273905	0/0	t0005	8349	8	0	0	8	0	0	copy fasta	EXOC5	chr14	57195507	57273905
EXOC5_chr14_57195507_57273905	0/0	t0006	8347	7	7	0	0	0	0	copy fasta	EXOC5	chr14	57195507	57273905
EXOC5_chr14_57195507_57273905	0/0	t0007	8349	7	0	3	2	0	2	copy fasta	EXOC5	chr14	57195507	57273905
EXOC5_chr14_57195507_57273905	0/0	t0008	8331	6	6	0	0	0	0	copy fasta	EXOC5	chr14	57195507	57273905
EXOC5_chr14_57195507_57273905	0/0	t0009	8350	6	4	2	0	0	0	copy fasta	EXOC5	chr14	57195507	57273905
EXOC5_chr14_57195507_57273905	0/0	t0010	8349	5	4	1	0	0	0	copy fasta	EXOC5	chr14	57195507	57273905
EXOC5_chr14_57195507_57273905	0/0	t0011	8349	5	0	0	4	0	1	copy fasta	EXOC5	chr14	57195507	57273905