JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	SAS	tseq	genename	chr	start	end
EXOC5_chr14_57195507_57273905	0/0	t0012	8343	4	4	0	0	0	copy fasta	EXOC5	chr14	57195507	57273905
EXOC5_chr14_57195507_57273905	0/0	t0013	8360	4	0	0	4	0	copy fasta	EXOC5	chr14	57195507	57273905
EXOC5_chr14_57195507_57273905	0/0	t0014	8359	4	0	0	4	0	copy fasta	EXOC5	chr14	57195507	57273905
EXOC5_chr14_57195507_57273905	0/0	t0015	8349	3	3	0	0	0	copy fasta	EXOC5	chr14	57195507	57273905
EXOC5_chr14_57195507_57273905	0/0	t0016	8351	3	2	1	0	0	copy fasta	EXOC5	chr14	57195507	57273905
EXOC5_chr14_57195507_57273905	0/0	t0017	8340	3	2	1	0	0	copy fasta	EXOC5	chr14	57195507	57273905
EXOC5_chr14_57195507_57273905	0/0	t0018	8348	3	1	2	0	0	copy fasta	EXOC5	chr14	57195507	57273905
EXOC5_chr14_57195507_57273905	0/0	t0019	8349	2	2	0	0	0	copy fasta	EXOC5	chr14	57195507	57273905
EXOC5_chr14_57195507_57273905	0/0	t0020	8349	2	2	0	0	0	copy fasta	EXOC5	chr14	57195507	57273905
EXOC5_chr14_57195507_57273905	0/0	t0021	8349	2	1	1	0	0	copy fasta	EXOC5	chr14	57195507	57273905
EXOC5_chr14_57195507_57273905	0/0	t0022	8351	2	2	0	0	0	copy fasta	EXOC5	chr14	57195507	57273905
EXOC5_chr14_57195507_57273905	0/0	t0023	8353	2	2	0	0	0	copy fasta	EXOC5	chr14	57195507	57273905
EXOC5_chr14_57195507_57273905	0/0	t0024	8348	2	0	2	0	0	copy fasta	EXOC5	chr14	57195507	57273905
EXOC5_chr14_57195507_57273905	0/0	t0025	8360	2	1	0	0	1	copy fasta	EXOC5	chr14	57195507	57273905
EXOC5_chr14_57195507_57273905	0/0	t0026	8357	2	0	0	2	0	copy fasta	EXOC5	chr14	57195507	57273905
EXOC5_chr14_57195507_57273905	0/0	t0027	8360	2	0	0	2	0	copy fasta	EXOC5	chr14	57195507	57273905
EXOC5_chr14_57195507_57273905	0/0	t0028	8353	1	1	0	0	0	copy fasta	EXOC5	chr14	57195507	57273905
EXOC5_chr14_57195507_57273905	0/0	t0029	8347	1	1	0	0	0	copy fasta	EXOC5	chr14	57195507	57273905
EXOC5_chr14_57195507_57273905	0/0	t0030	8484	1	1	0	0	0	copy fasta	EXOC5	chr14	57195507	57273905
EXOC5_chr14_57195507_57273905	0/0	t0031	8452	1	1	0	0	0	copy fasta	EXOC5	chr14	57195507	57273905
EXOC5_chr14_57195507_57273905	0/0	t0032	8420	1	1	0	0	0	copy fasta	EXOC5	chr14	57195507	57273905
EXOC5_chr14_57195507_57273905	0/0	t0033	8486	1	1	0	0	0	copy fasta	EXOC5	chr14	57195507	57273905
EXOC5_chr14_57195507_57273905	0/0	t0034	8522	1	1	0	0	0	copy fasta	EXOC5	chr14	57195507	57273905
EXOC5_chr14_57195507_57273905	0/0	t0035	8347	1	1	0	0	0	copy fasta	EXOC5	chr14	57195507	57273905
EXOC5_chr14_57195507_57273905	0/0	t0036	8349	1	0	1	0	0	copy fasta	EXOC5	chr14	57195507	57273905
EXOC5_chr14_57195507_57273905	0/0	t0037	8349	1	0	1	0	0	copy fasta	EXOC5	chr14	57195507	57273905
EXOC5_chr14_57195507_57273905	0/0	t0038	8350	1	0	0	1	0	copy fasta	EXOC5	chr14	57195507	57273905
EXOC5_chr14_57195507_57273905	0/0	t0039	8349	1	1	0	0	0	copy fasta	EXOC5	chr14	57195507	57273905
EXOC5_chr14_57195507_57273905	0/0	t0040	8349	1	1	0	0	0	copy fasta	EXOC5	chr14	57195507	57273905
EXOC5_chr14_57195507_57273905	0/0	t0041	8349	1	1	0	0	0	copy fasta	EXOC5	chr14	57195507	57273905
EXOC5_chr14_57195507_57273905	0/0	t0042	8349	1	0	1	0	0	copy fasta	EXOC5	chr14	57195507	57273905
EXOC5_chr14_57195507_57273905	0/0	t0043	8349	1	1	0	0	0	copy fasta	EXOC5	chr14	57195507	57273905
EXOC5_chr14_57195507_57273905	0/0	t0044	8349	1	0	0	1	0	copy fasta	EXOC5	chr14	57195507	57273905
EXOC5_chr14_57195507_57273905	0/1	t0045	8360	1	0	0	0	0	copy fasta	EXOC5	chr14	57195507	57273905
EXOC5_chr14_57195507_57273905	0/0	t0046	8362	1	0	0	1	0	copy fasta	EXOC5	chr14	57195507	57273905
EXOC5_chr14_57195507_57273905	0/0	t0047	8356	1	0	0	0	1	copy fasta	EXOC5	chr14	57195507	57273905
EXOC5_chr14_57195507_57273905	0/0	t0048	8338	1	0	0	0	1	copy fasta	EXOC5	chr14	57195507	57273905
EXOC5_chr14_57195507_57273905	0/0	t0049	8385	1	0	0	1	0	copy fasta	EXOC5	chr14	57195507	57273905
EXOC5_chr14_57195507_57273905	0/0	t0050	8360	1	1	0	0	0	copy fasta	EXOC5	chr14	57195507	57273905
EXOC5_chr14_57195507_57273905	0/0	t0051	8362	1	0	0	1	0	copy fasta	EXOC5	chr14	57195507	57273905
EXOC5_chr14_57195507_57273905	0/0	t0052	8360	1	1	0	0	0	copy fasta	EXOC5	chr14	57195507	57273905
EXOC5_chr14_57195507_57273905	0/0	t0053	8358	1	0	0	1	0	copy fasta	EXOC5	chr14	57195507	57273905
EXOC5_chr14_57195507_57273905	0/0	t0054	8360	1	0	1	0	0	copy fasta	EXOC5	chr14	57195507	57273905
EXOC5_chr14_57195507_57273905	0/0	t0055	8354	1	1	0	0	0	copy fasta	EXOC5	chr14	57195507	57273905
EXOC5_chr14_57195507_57273905	0/0	t0056	8360	1	0	1	0	0	copy fasta	EXOC5	chr14	57195507	57273905
EXOC5_chr14_57195507_57273905	0/0	t0057	8360	1	0	0	0	1	copy fasta	EXOC5	chr14	57195507	57273905
EXOC5_chr14_57195507_57273905	0/0	t0058	8360	1	0	0	1	0	copy fasta	EXOC5	chr14	57195507	57273905
EXOC5_chr14_57195507_57273905	0/0	t0059	8356	1	1	0	0	0	copy fasta	EXOC5	chr14	57195507	57273905
EXOC5_chr14_57195507_57273905	0/0	t0060	8360	1	0	0	0	1	copy fasta	EXOC5	chr14	57195507	57273905
EXOC5_chr14_57195507_57273905	0/0	t0061	8362	1	0	1	0	0	copy fasta	EXOC5	chr14	57195507	57273905