JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
EXOC6B_chr2_72170984_72831033	1/0	t0001	3475	20	10	4	0	1	4	copy fasta	EXOC6B	chr2	72170984	72831033
EXOC6B_chr2_72170984_72831033	0/0	t0002	3477	15	10	3	0	1	1	copy fasta	EXOC6B	chr2	72170984	72831033
EXOC6B_chr2_72170984_72831033	0/0	t0003	3476	14	10	3	0	1	0	copy fasta	EXOC6B	chr2	72170984	72831033
EXOC6B_chr2_72170984_72831033	0/0	t0004	3475	8	1	3	1	3	0	copy fasta	EXOC6B	chr2	72170984	72831033
EXOC6B_chr2_72170984_72831033	0/0	t0005	3475	8	7	1	0	0	0	copy fasta	EXOC6B	chr2	72170984	72831033
EXOC6B_chr2_72170984_72831033	0/0	t0006	3475	5	4	1	0	0	0	copy fasta	EXOC6B	chr2	72170984	72831033
EXOC6B_chr2_72170984_72831033	0/1	t0007	3477	4	2	1	0	0	0	copy fasta	EXOC6B	chr2	72170984	72831033
EXOC6B_chr2_72170984_72831033	0/0	t0008	3475	3	3	0	0	0	0	copy fasta	EXOC6B	chr2	72170984	72831033
EXOC6B_chr2_72170984_72831033	0/0	t0009	3474	3	2	1	0	0	0	copy fasta	EXOC6B	chr2	72170984	72831033
EXOC6B_chr2_72170984_72831033	0/0	t0010	3475	3	3	0	0	0	0	copy fasta	EXOC6B	chr2	72170984	72831033
EXOC6B_chr2_72170984_72831033	0/0	t0011	3475	3	3	0	0	0	0	copy fasta	EXOC6B	chr2	72170984	72831033
EXOC6B_chr2_72170984_72831033	0/0	t0012	3477	2	0	0	0	1	1	copy fasta	EXOC6B	chr2	72170984	72831033
EXOC6B_chr2_72170984_72831033	0/0	t0013	3474	2	2	0	0	0	0	copy fasta	EXOC6B	chr2	72170984	72831033
EXOC6B_chr2_72170984_72831033	0/0	t0014	3474	2	0	0	0	0	2	copy fasta	EXOC6B	chr2	72170984	72831033
EXOC6B_chr2_72170984_72831033	0/0	t0015	3475	2	0	1	0	1	0	copy fasta	EXOC6B	chr2	72170984	72831033
EXOC6B_chr2_72170984_72831033	0/0	t0016	3475	1	0	1	0	0	0	copy fasta	EXOC6B	chr2	72170984	72831033
EXOC6B_chr2_72170984_72831033	0/0	t0017	3477	1	1	0	0	0	0	copy fasta	EXOC6B	chr2	72170984	72831033
EXOC6B_chr2_72170984_72831033	0/0	t0018	3474	1	1	0	0	0	0	copy fasta	EXOC6B	chr2	72170984	72831033
EXOC6B_chr2_72170984_72831033	0/0	t0019	3478	1	1	0	0	0	0	copy fasta	EXOC6B	chr2	72170984	72831033
EXOC6B_chr2_72170984_72831033	0/0	t0020	3475	1	1	0	0	0	0	copy fasta	EXOC6B	chr2	72170984	72831033
EXOC6B_chr2_72170984_72831033	0/0	t0021	3475	1	0	0	1	0	0	copy fasta	EXOC6B	chr2	72170984	72831033
EXOC6B_chr2_72170984_72831033	0/0	t0022	3475	1	0	1	0	0	0	copy fasta	EXOC6B	chr2	72170984	72831033
EXOC6B_chr2_72170984_72831033	0/0	t0023	3475	1	0	1	0	0	0	copy fasta	EXOC6B	chr2	72170984	72831033
EXOC6B_chr2_72170984_72831033	0/0	t0024	3476	1	1	0	0	0	0	copy fasta	EXOC6B	chr2	72170984	72831033
EXOC6B_chr2_72170984_72831033	0/0	t0025	3478	1	0	1	0	0	0	copy fasta	EXOC6B	chr2	72170984	72831033
EXOC6_chr10_92843520_93064490	0/1	t0001	1150	143	24	34	59	8	17	copy fasta	EXOC6	chr10	92843520	93064490
EXOC6_chr10_92843520_93064490	0/0	t0002	1150	96	26	13	40	3	14	copy fasta	EXOC6	chr10	92843520	93064490
EXOC6_chr10_92843520_93064490	0/0	t0003	1150	19	7	9	1	1	1	copy fasta	EXOC6	chr10	92843520	93064490
EXOC6_chr10_92843520_93064490	1/0	t0004	1150	12	9	0	2	0	0	copy fasta	EXOC6	chr10	92843520	93064490
EXOC6_chr10_92843520_93064490	0/0	t0005	1150	5	5	0	0	0	0	copy fasta	EXOC6	chr10	92843520	93064490
EXOC6_chr10_92843520_93064490	0/0	t0006	1150	4	4	0	0	0	0	copy fasta	EXOC6	chr10	92843520	93064490
EXOC6_chr10_92843520_93064490	0/0	t0007	1154	4	4	0	0	0	0	copy fasta	EXOC6	chr10	92843520	93064490
EXOC6_chr10_92843520_93064490	0/0	t0008	1150	2	2	0	0	0	0	copy fasta	EXOC6	chr10	92843520	93064490
EXOC6_chr10_92843520_93064490	0/0	t0009	1150	2	2	0	0	0	0	copy fasta	EXOC6	chr10	92843520	93064490
EXOC6_chr10_92843520_93064490	0/0	t0010	1150	1	1	0	0	0	0	copy fasta	EXOC6	chr10	92843520	93064490
EXOC7_chr17_76076016_76108787	0/1	t0001	2728	124	4	23	72	7	17	copy fasta	EXOC7	chr17	76076016	76108787
EXOC7_chr17_76076016_76108787	1/0	t0002	2728	89	23	20	37	3	5	copy fasta	EXOC7	chr17	76076016	76108787
EXOC7_chr17_76076016_76108787	0/0	t0003	2728	77	8	13	46	4	6	copy fasta	EXOC7	chr17	76076016	76108787
EXOC7_chr17_76076016_76108787	0/0	t0004	2728	30	25	5	0	0	0	copy fasta	EXOC7	chr17	76076016	76108787
EXOC7_chr17_76076016_76108787	0/0	t0005	2728	10	5	3	0	0	2	copy fasta	EXOC7	chr17	76076016	76108787
EXOC7_chr17_76076016_76108787	0/0	t0006	2728	6	6	0	0	0	0	copy fasta	EXOC7	chr17	76076016	76108787
EXOC7_chr17_76076016_76108787	0/0	t0007	2728	3	3	0	0	0	0	copy fasta	EXOC7	chr17	76076016	76108787
EXOC7_chr17_76076016_76108787	0/0	t0008	2727	3	2	1	0	0	0	copy fasta	EXOC7	chr17	76076016	76108787
EXOC7_chr17_76076016_76108787	0/0	t0009	2728	3	3	0	0	0	0	copy fasta	EXOC7	chr17	76076016	76108787
EXOC7_chr17_76076016_76108787	0/0	t0010	2728	3	3	0	0	0	0	copy fasta	EXOC7	chr17	76076016	76108787
EXOC7_chr17_76076016_76108787	0/0	t0011	2728	2	2	0	0	0	0	copy fasta	EXOC7	chr17	76076016	76108787
EXOC7_chr17_76076016_76108787	0/0	t0012	2728	2	0	1	0	1	0	copy fasta	EXOC7	chr17	76076016	76108787
EXOC7_chr17_76076016_76108787	0/0	t0013	2727	1	1	0	0	0	0	copy fasta	EXOC7	chr17	76076016	76108787
EXOC7_chr17_76076016_76108787	0/0	t0014	2728	1	0	0	1	0	0	copy fasta	EXOC7	chr17	76076016	76108787
EXOC7_chr17_76076016_76108787	0/0	t0015	2728	1	0	0	0	1	0	copy fasta	EXOC7	chr17	76076016	76108787