JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
EXOC7_chr17_76076016_76108787	0/0	t0016	2728	1	1	0	0	0	0	copy fasta	EXOC7	chr17	76076016	76108787
EXOC7_chr17_76076016_76108787	0/0	t0017	2728	1	1	0	0	0	0	copy fasta	EXOC7	chr17	76076016	76108787
EXOC7_chr17_76076016_76108787	0/0	t0018	2728	1	0	0	1	0	0	copy fasta	EXOC7	chr17	76076016	76108787
EXOC7_chr17_76076016_76108787	0/0	t0019	2728	1	0	0	0	0	1	copy fasta	EXOC7	chr17	76076016	76108787
EXOC7_chr17_76076016_76108787	0/0	t0020	2728	1	0	0	0	0	1	copy fasta	EXOC7	chr17	76076016	76108787
EXOC7_chr17_76076016_76108787	0/0	t0021	2728	1	0	0	0	0	1	copy fasta	EXOC7	chr17	76076016	76108787
EXOC7_chr17_76076016_76108787	0/0	t0022	2728	1	0	0	1	0	0	copy fasta	EXOC7	chr17	76076016	76108787
EXOC7_chr17_76076016_76108787	0/0	t0023	2728	1	0	0	0	0	1	copy fasta	EXOC7	chr17	76076016	76108787
EXOC7_chr17_76076016_76108787	0/0	t0024	2728	1	1	0	0	0	0	copy fasta	EXOC7	chr17	76076016	76108787
EXOC7_chr17_76076016_76108787	0/0	t0025	2728	1	1	0	0	0	0	copy fasta	EXOC7	chr17	76076016	76108787
EXOC7_chr17_76076016_76108787	0/0	t0026	2728	1	1	0	0	0	0	copy fasta	EXOC7	chr17	76076016	76108787
EXOC8_chr1_231327753_231342852	0/1	t0001	2923	169	18	30	97	7	16	copy fasta	EXOC8	chr1	231327753	231342852
EXOC8_chr1_231327753_231342852	0/0	t0002	2922	96	21	19	46	3	7	copy fasta	EXOC8	chr1	231327753	231342852
EXOC8_chr1_231327753_231342852	1/0	t0003	2923	53	6	4	26	4	12	copy fasta	EXOC8	chr1	231327753	231342852
EXOC8_chr1_231327753_231342852	0/0	t0004	2923	19	19	0	0	0	0	copy fasta	EXOC8	chr1	231327753	231342852
EXOC8_chr1_231327753_231342852	0/0	t0005	2918	9	0	2	3	1	3	copy fasta	EXOC8	chr1	231327753	231342852
EXOC8_chr1_231327753_231342852	0/0	t0006	2923	6	6	0	0	0	0	copy fasta	EXOC8	chr1	231327753	231342852
EXOC8_chr1_231327753_231342852	0/0	t0007	2923	4	4	0	0	0	0	copy fasta	EXOC8	chr1	231327753	231342852
EXOC8_chr1_231327753_231342852	0/0	t0008	2923	3	2	1	0	0	0	copy fasta	EXOC8	chr1	231327753	231342852
EXOC8_chr1_231327753_231342852	0/0	t0009	2923	3	0	3	0	0	0	copy fasta	EXOC8	chr1	231327753	231342852
EXOC8_chr1_231327753_231342852	0/0	t0010	2923	3	3	0	0	0	0	copy fasta	EXOC8	chr1	231327753	231342852
EXOC8_chr1_231327753_231342852	0/0	t0011	2918	3	0	0	3	0	0	copy fasta	EXOC8	chr1	231327753	231342852
EXOC8_chr1_231327753_231342852	0/0	t0012	2923	2	0	0	2	0	0	copy fasta	EXOC8	chr1	231327753	231342852
EXOC8_chr1_231327753_231342852	0/0	t0013	2923	2	2	0	0	0	0	copy fasta	EXOC8	chr1	231327753	231342852
EXOC8_chr1_231327753_231342852	0/0	t0014	2922	2	0	0	1	0	1	copy fasta	EXOC8	chr1	231327753	231342852
EXOC8_chr1_231327753_231342852	0/0	t0015	2923	2	0	0	2	0	0	copy fasta	EXOC8	chr1	231327753	231342852
EXOC8_chr1_231327753_231342852	0/0	t0016	2922	1	0	1	0	0	0	copy fasta	EXOC8	chr1	231327753	231342852
EXOC8_chr1_231327753_231342852	0/0	t0017	2923	1	0	0	0	0	1	copy fasta	EXOC8	chr1	231327753	231342852
EXOC8_chr1_231327753_231342852	0/0	t0018	2923	1	0	0	0	0	1	copy fasta	EXOC8	chr1	231327753	231342852
EXOC8_chr1_231327753_231342852	0/0	t0019	2923	1	1	0	0	0	0	copy fasta	EXOC8	chr1	231327753	231342852
EXOC8_chr1_231327753_231342852	0/0	t0020	2923	1	0	0	0	1	0	copy fasta	EXOC8	chr1	231327753	231342852
EXOC8_chr1_231327753_231342852	0/0	t0021	2923	1	0	0	1	0	0	copy fasta	EXOC8	chr1	231327753	231342852
EXOC8_chr1_231327753_231342852	0/0	t0022	2923	1	0	0	0	0	1	copy fasta	EXOC8	chr1	231327753	231342852
EXOC8_chr1_231327753_231342852	0/0	t0023	2923	1	1	0	0	0	0	copy fasta	EXOC8	chr1	231327753	231342852
EXOC8_chr1_231327753_231342852	0/0	t0024	2922	1	0	0	1	0	0	copy fasta	EXOC8	chr1	231327753	231342852
EXOC8_chr1_231327753_231342852	0/0	t0025	2922	1	1	0	0	0	0	copy fasta	EXOC8	chr1	231327753	231342852
EXOC8_chr1_231327753_231342852	0/0	t0026	2922	1	0	0	0	0	1	copy fasta	EXOC8	chr1	231327753	231342852
EXOC8_chr1_231327753_231342852	0/0	t0027	2922	1	0	0	0	0	1	copy fasta	EXOC8	chr1	231327753	231342852
EXOG_chr3_38491340_38531303	0/0	t0001	1970	191	44	42	84	5	16	copy fasta	EXOG	chr3	38491340	38531303
EXOG_chr3_38491340_38531303	1/1	t0002	1970	111	11	15	62	5	16	copy fasta	EXOG	chr3	38491340	38531303
EXOG_chr3_38491340_38531303	0/0	t0003	1970	45	8	7	23	0	7	copy fasta	EXOG	chr3	38491340	38531303
EXOG_chr3_38491340_38531303	0/0	t0004	1970	23	0	0	22	0	1	copy fasta	EXOG	chr3	38491340	38531303
EXOG_chr3_38491340_38531303	0/0	t0005	1970	11	11	0	0	0	0	copy fasta	EXOG	chr3	38491340	38531303
EXOG_chr3_38491340_38531303	0/0	t0006	1970	8	7	1	0	0	0	copy fasta	EXOG	chr3	38491340	38531303
EXOG_chr3_38491340_38531303	0/0	t0007	1970	4	0	4	0	0	0	copy fasta	EXOG	chr3	38491340	38531303
EXOG_chr3_38491340_38531303	0/0	t0008	1970	4	2	2	0	0	0	copy fasta	EXOG	chr3	38491340	38531303
EXOG_chr3_38491340_38531303	0/0	t0009	1970	3	3	0	0	0	0	copy fasta	EXOG	chr3	38491340	38531303
EXOG_chr3_38491340_38531303	0/0	t0010	1970	3	3	0	0	0	0	copy fasta	EXOG	chr3	38491340	38531303
EXOG_chr3_38491340_38531303	0/0	t0011	1970	2	0	2	0	0	0	copy fasta	EXOG	chr3	38491340	38531303
EXOG_chr3_38491340_38531303	0/0	t0012	1970	2	1	1	0	0	0	copy fasta	EXOG	chr3	38491340	38531303