JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
EXOG_chr3_38491340_38531303	0/0	t0013	1970	1	1	0	0	0	0	copy fasta	EXOG	chr3	38491340	38531303
EXOG_chr3_38491340_38531303	0/0	t0014	1970	1	0	0	1	0	0	copy fasta	EXOG	chr3	38491340	38531303
EXOG_chr3_38491340_38531303	0/0	t0015	1970	1	1	0	0	0	0	copy fasta	EXOG	chr3	38491340	38531303
EXOG_chr3_38491340_38531303	0/0	t0016	1970	1	0	0	1	0	0	copy fasta	EXOG	chr3	38491340	38531303
EXOG_chr3_38491340_38531303	0/0	t0017	1970	1	0	0	1	0	0	copy fasta	EXOG	chr3	38491340	38531303
EXOSC10_chr1_11061618_11104869	1/1	t0001	139	264	91	51	75	11	34	copy fasta	EXOSC10	chr1	11061618	11104869
EXOSC10_chr1_11061618_11104869	0/0	t0002	139	16	0	2	9	1	4	copy fasta	EXOSC10	chr1	11061618	11104869
EXOSC10_chr1_11061618_11104869	0/0	t0003	139	3	3	0	0	0	0	copy fasta	EXOSC10	chr1	11061618	11104869
EXOSC10_chr1_11061618_11104869	0/0	t0004	139	1	0	1	0	0	0	copy fasta	EXOSC10	chr1	11061618	11104869
EXOSC1_chr10_97430909_97451006	1/1	t0001	558	423	83	78	200	14	46	copy fasta	EXOSC1	chr10	97430909	97451006
EXOSC1_chr10_97430909_97451006	0/0	t0002	558	4	4	0	0	0	0	copy fasta	EXOSC1	chr10	97430909	97451006
EXOSC1_chr10_97430909_97451006	0/0	t0003	558	2	2	0	0	0	0	copy fasta	EXOSC1	chr10	97430909	97451006
EXOSC1_chr10_97430909_97451006	0/0	t0004	558	1	1	0	0	0	0	copy fasta	EXOSC1	chr10	97430909	97451006
EXOSC2_chr9_130688780_130709892	1/1	t0001	1131	406	84	77	180	18	45	copy fasta	EXOSC2	chr9	130688780	130709892
EXOSC2_chr9_130688780_130709892	0/0	t0002	1131	4	3	1	0	0	0	copy fasta	EXOSC2	chr9	130688780	130709892
EXOSC2_chr9_130688780_130709892	0/0	t0003	1131	4	4	0	0	0	0	copy fasta	EXOSC2	chr9	130688780	130709892
EXOSC2_chr9_130688780_130709892	0/0	t0004	1131	2	0	2	0	0	0	copy fasta	EXOSC2	chr9	130688780	130709892
EXOSC2_chr9_130688780_130709892	0/0	t0005	1131	1	1	0	0	0	0	copy fasta	EXOSC2	chr9	130688780	130709892
EXOSC2_chr9_130688780_130709892	0/0	t0006	1131	1	0	1	0	0	0	copy fasta	EXOSC2	chr9	130688780	130709892
EXOSC2_chr9_130688780_130709892	0/0	t0007	1131	1	0	0	1	0	0	copy fasta	EXOSC2	chr9	130688780	130709892
EXOSC2_chr9_130688780_130709892	0/0	t0008	1131	1	1	0	0	0	0	copy fasta	EXOSC2	chr9	130688780	130709892
EXOSC2_chr9_130688780_130709892	0/0	t0009	1131	1	1	0	0	0	0	copy fasta	EXOSC2	chr9	130688780	130709892
EXOSC2_chr9_130688780_130709892	0/0	t0010	1131	1	1	0	0	0	0	copy fasta	EXOSC2	chr9	130688780	130709892
EXOSC2_chr9_130688780_130709892	0/0	t0011	1131	1	0	0	0	0	1	copy fasta	EXOSC2	chr9	130688780	130709892
EXOSC2_chr9_130688780_130709892	0/0	t0012	1131	1	0	1	0	0	0	copy fasta	EXOSC2	chr9	130688780	130709892
EXOSC2_chr9_130688780_130709892	0/0	t0013	1131	1	0	0	1	0	0	copy fasta	EXOSC2	chr9	130688780	130709892
EXOSC2_chr9_130688780_130709892	0/0	t0014	1131	1	1	0	0	0	0	copy fasta	EXOSC2	chr9	130688780	130709892
EXOSC3_chr9_37774714_37790064	1/1	t0001	986	342	44	67	179	11	39	copy fasta	EXOSC3	chr9	37774714	37790064
EXOSC3_chr9_37774714_37790064	0/0	t0002	986	42	16	6	15	1	4	copy fasta	EXOSC3	chr9	37774714	37790064
EXOSC3_chr9_37774714_37790064	0/0	t0003	983	23	20	2	0	0	1	copy fasta	EXOSC3	chr9	37774714	37790064
EXOSC3_chr9_37774714_37790064	0/0	t0004	983	17	0	4	12	0	1	copy fasta	EXOSC3	chr9	37774714	37790064
EXOSC3_chr9_37774714_37790064	0/0	t0005	986	3	3	0	0	0	0	copy fasta	EXOSC3	chr9	37774714	37790064
EXOSC3_chr9_37774714_37790064	0/0	t0006	986	2	1	0	0	0	1	copy fasta	EXOSC3	chr9	37774714	37790064
EXOSC3_chr9_37774714_37790064	0/0	t0007	986	1	0	1	0	0	0	copy fasta	EXOSC3	chr9	37774714	37790064
EXOSC3_chr9_37774714_37790064	0/0	t0008	986	1	1	0	0	0	0	copy fasta	EXOSC3	chr9	37774714	37790064
EXOSC3_chr9_37774714_37790064	0/0	t0009	986	1	1	0	0	0	0	copy fasta	EXOSC3	chr9	37774714	37790064
EXOSC4_chr8_144073672_144085648	1/1	t0001	105	302	94	72	88	10	36	copy fasta	EXOSC4	chr8	144073672	144085648
EXOSC5_chr19_41381374_41402359	1/1	t0001	291	392	91	66	174	16	43	copy fasta	EXOSC5	chr19	41381374	41402359
EXOSC5_chr19_41381374_41402359	0/0	t0002	291	1	0	1	0	0	0	copy fasta	EXOSC5	chr19	41381374	41402359
EXOSC5_chr19_41381374_41402359	0/0	t0003	291	1	0	0	0	0	1	copy fasta	EXOSC5	chr19	41381374	41402359
EXOSC5_chr19_41381374_41402359	0/0	t0004	291	1	1	0	0	0	0	copy fasta	EXOSC5	chr19	41381374	41402359
EXOSC5_chr19_41381374_41402359	0/0	t0005	291	1	0	1	0	0	0	copy fasta	EXOSC5	chr19	41381374	41402359
EXOSC6_chr16_70241778_70256940	0/1	t0001	4337	62	2	8	47	2	2	copy fasta	EXOSC6	chr16	70241778	70256940
EXOSC6_chr16_70241778_70256940	0/0	t0002	4344	52	9	13	13	6	11	copy fasta	EXOSC6	chr16	70241778	70256940
EXOSC6_chr16_70241778_70256940	1/0	t0003	4345	32	5	11	10	1	4	copy fasta	EXOSC6	chr16	70241778	70256940
EXOSC6_chr16_70241778_70256940	0/0	t0004	4342	24	0	5	13	1	5	copy fasta	EXOSC6	chr16	70241778	70256940
EXOSC6_chr16_70241778_70256940	0/0	t0005	4343	21	1	3	15	0	2	copy fasta	EXOSC6	chr16	70241778	70256940
EXOSC6_chr16_70241778_70256940	0/0	t0006	4343	16	2	0	12	1	1	copy fasta	EXOSC6	chr16	70241778	70256940
EXOSC6_chr16_70241778_70256940	0/0	t0007	4345	10	0	3	5	1	1	copy fasta	EXOSC6	chr16	70241778	70256940
EXOSC6_chr16_70241778_70256940	0/0	t0008	4345	8	8	0	0	0	0	copy fasta	EXOSC6	chr16	70241778	70256940