JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	SAS	tseq	genename	chr	start	end
EXOSC6_chr16_70241778_70256940	0/0	t0059	4344	1	0	1	0	0	copy fasta	EXOSC6	chr16	70241778	70256940
EXOSC6_chr16_70241778_70256940	0/0	t0060	4347	1	1	0	0	0	copy fasta	EXOSC6	chr16	70241778	70256940
EXOSC6_chr16_70241778_70256940	0/0	t0061	4347	1	1	0	0	0	copy fasta	EXOSC6	chr16	70241778	70256940
EXOSC6_chr16_70241778_70256940	0/0	t0062	4346	1	0	1	0	0	copy fasta	EXOSC6	chr16	70241778	70256940
EXOSC6_chr16_70241778_70256940	0/0	t0063	4346	1	1	0	0	0	copy fasta	EXOSC6	chr16	70241778	70256940
EXOSC6_chr16_70241778_70256940	0/0	t0064	4347	1	1	0	0	0	copy fasta	EXOSC6	chr16	70241778	70256940
EXOSC6_chr16_70241778_70256940	0/0	t0065	4343	1	0	0	1	0	copy fasta	EXOSC6	chr16	70241778	70256940
EXOSC6_chr16_70241778_70256940	0/0	t0066	4342	1	0	1	0	0	copy fasta	EXOSC6	chr16	70241778	70256940
EXOSC6_chr16_70241778_70256940	0/0	t0067	4342	1	0	0	1	0	copy fasta	EXOSC6	chr16	70241778	70256940
EXOSC6_chr16_70241778_70256940	0/0	t0068	4342	1	0	0	1	0	copy fasta	EXOSC6	chr16	70241778	70256940
EXOSC6_chr16_70241778_70256940	0/0	t0069	4344	1	0	0	1	0	copy fasta	EXOSC6	chr16	70241778	70256940
EXOSC6_chr16_70241778_70256940	0/0	t0070	4343	1	1	0	0	0	copy fasta	EXOSC6	chr16	70241778	70256940
EXOSC6_chr16_70241778_70256940	0/0	t0071	4343	1	0	0	0	1	copy fasta	EXOSC6	chr16	70241778	70256940
EXOSC6_chr16_70241778_70256940	0/0	t0072	4344	1	0	1	0	0	copy fasta	EXOSC6	chr16	70241778	70256940
EXOSC6_chr16_70241778_70256940	0/0	t0073	4343	1	0	0	1	0	copy fasta	EXOSC6	chr16	70241778	70256940
EXOSC6_chr16_70241778_70256940	0/0	t0074	4343	1	0	0	1	0	copy fasta	EXOSC6	chr16	70241778	70256940
EXOSC6_chr16_70241778_70256940	0/0	t0075	4342	1	0	0	1	0	copy fasta	EXOSC6	chr16	70241778	70256940
EXOSC6_chr16_70241778_70256940	0/0	t0076	4345	1	1	0	0	0	copy fasta	EXOSC6	chr16	70241778	70256940
EXOSC6_chr16_70241778_70256940	0/0	t0077	4344	1	1	0	0	0	copy fasta	EXOSC6	chr16	70241778	70256940
EXOSC6_chr16_70241778_70256940	0/0	t0078	4333	1	0	0	1	0	copy fasta	EXOSC6	chr16	70241778	70256940
EXOSC6_chr16_70241778_70256940	0/0	t0079	4343	1	1	0	0	0	copy fasta	EXOSC6	chr16	70241778	70256940
EXOSC6_chr16_70241778_70256940	0/0	t0080	4345	1	0	1	0	0	copy fasta	EXOSC6	chr16	70241778	70256940
EXOSC6_chr16_70241778_70256940	0/0	t0081	4339	1	0	0	1	0	copy fasta	EXOSC6	chr16	70241778	70256940
EXOSC6_chr16_70241778_70256940	0/0	t0082	4337	1	0	0	1	0	copy fasta	EXOSC6	chr16	70241778	70256940
EXOSC6_chr16_70241778_70256940	0/0	t0083	4336	1	0	0	1	0	copy fasta	EXOSC6	chr16	70241778	70256940
EXOSC6_chr16_70241778_70256940	0/0	t0084	4336	1	0	0	1	0	copy fasta	EXOSC6	chr16	70241778	70256940
EXOSC6_chr16_70241778_70256940	0/0	t0085	4337	1	0	0	0	1	copy fasta	EXOSC6	chr16	70241778	70256940
EXOSC6_chr16_70241778_70256940	0/0	t0086	4337	1	0	0	1	0	copy fasta	EXOSC6	chr16	70241778	70256940
EXOSC6_chr16_70241778_70256940	0/0	t0087	4338	1	0	1	0	0	copy fasta	EXOSC6	chr16	70241778	70256940
EXOSC6_chr16_70241778_70256940	0/0	t0088	4344	1	0	1	0	0	copy fasta	EXOSC6	chr16	70241778	70256940
EXOSC6_chr16_70241778_70256940	0/0	t0089	4345	1	1	0	0	0	copy fasta	EXOSC6	chr16	70241778	70256940
EXOSC6_chr16_70241778_70256940	0/0	t0090	4345	1	1	0	0	0	copy fasta	EXOSC6	chr16	70241778	70256940
EXOSC6_chr16_70241778_70256940	0/0	t0091	4344	1	0	0	0	1	copy fasta	EXOSC6	chr16	70241778	70256940
EXOSC6_chr16_70241778_70256940	0/0	t0092	4346	1	1	0	0	0	copy fasta	EXOSC6	chr16	70241778	70256940
EXOSC6_chr16_70241778_70256940	0/0	t0093	4354	1	1	0	0	0	copy fasta	EXOSC6	chr16	70241778	70256940
EXOSC6_chr16_70241778_70256940	0/0	t0094	4342	1	0	0	1	0	copy fasta	EXOSC6	chr16	70241778	70256940
EXOSC6_chr16_70241778_70256940	0/0	t0095	4345	1	0	0	1	0	copy fasta	EXOSC6	chr16	70241778	70256940
EXOSC6_chr16_70241778_70256940	0/0	t0096	4344	1	1	0	0	0	copy fasta	EXOSC6	chr16	70241778	70256940
EXOSC6_chr16_70241778_70256940	0/0	t0097	4344	1	0	0	1	0	copy fasta	EXOSC6	chr16	70241778	70256940
EXOSC6_chr16_70241778_70256940	0/0	t0098	4339	1	0	0	0	1	copy fasta	EXOSC6	chr16	70241778	70256940
EXOSC6_chr16_70241778_70256940	0/0	t0099	4347	1	0	0	0	1	copy fasta	EXOSC6	chr16	70241778	70256940
EXOSC6_chr16_70241778_70256940	0/0	t0100	4348	1	0	1	0	0	copy fasta	EXOSC6	chr16	70241778	70256940
EXOSC6_chr16_70241778_70256940	0/0	t0101	4344	1	1	0	0	0	copy fasta	EXOSC6	chr16	70241778	70256940
EXOSC6_chr16_70241778_70256940	0/0	t0102	4345	1	0	0	0	1	copy fasta	EXOSC6	chr16	70241778	70256940
EXOSC6_chr16_70241778_70256940	0/0	t0103	4340	1	1	0	0	0	copy fasta	EXOSC6	chr16	70241778	70256940
EXOSC6_chr16_70241778_70256940	0/0	t0104	4339	1	0	0	1	0	copy fasta	EXOSC6	chr16	70241778	70256940
EXOSC6_chr16_70241778_70256940	0/0	t0105	4332	1	0	1	0	0	copy fasta	EXOSC6	chr16	70241778	70256940
EXOSC6_chr16_70241778_70256940	0/0	t0106	4347	1	1	0	0	0	copy fasta	EXOSC6	chr16	70241778	70256940
EXOSC6_chr16_70241778_70256940	0/0	t0107	4349	1	1	0	0	0	copy fasta	EXOSC6	chr16	70241778	70256940
EXOSC6_chr16_70241778_70256940	0/0	t0108	4349	1	1	0	0	0	copy fasta	EXOSC6	chr16	70241778	70256940