JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
EXOSC6_chr16_70241778_70256940	0/0	t0109	4341	1	1	0	0	0	0	copy fasta	EXOSC6	chr16	70241778	70256940
EXOSC6_chr16_70241778_70256940	0/0	t0110	4340	1	0	0	1	0	0	copy fasta	EXOSC6	chr16	70241778	70256940
EXOSC7_chr3_44971244_45016471	1/1	t0001	167	340	94	74	116	16	38	copy fasta	EXOSC7	chr3	44971244	45016471
EXOSC8_chr13_36995786_37014614	1/1	t0001	336	386	90	78	162	14	40	copy fasta	EXOSC8	chr13	36995786	37014614
EXOSC8_chr13_36995786_37014614	0/0	t0002	336	4	0	0	4	0	0	copy fasta	EXOSC8	chr13	36995786	37014614
EXOSC9_chr4_121796323_121822021	1/1	t0001	268	391	83	80	172	11	43	copy fasta	EXOSC9	chr4	121796323	121822021
EXOSC9_chr4_121796323_121822021	0/0	t0002	268	5	5	0	0	0	0	copy fasta	EXOSC9	chr4	121796323	121822021
EXOSC9_chr4_121796323_121822021	0/0	t0003	268	1	0	0	0	0	1	copy fasta	EXOSC9	chr4	121796323	121822021
EXOSC9_chr4_121796323_121822021	0/0	t0004	268	1	0	0	1	0	0	copy fasta	EXOSC9	chr4	121796323	121822021
EXOSC9_chr4_121796323_121822021	0/0	t0005	268	1	0	0	0	1	0	copy fasta	EXOSC9	chr4	121796323	121822021
EXOSC9_chr4_121796323_121822021	0/0	t0006	268	1	0	0	1	0	0	copy fasta	EXOSC9	chr4	121796323	121822021
EXPH5_chr11_108500435_108598768	1/1	t0001	4335	73	8	12	42	2	7	copy fasta	EXPH5	chr11	108500435	108598768
EXPH5_chr11_108500435_108598768	0/0	t0002	4336	67	10	16	22	4	15	copy fasta	EXPH5	chr11	108500435	108598768
EXPH5_chr11_108500435_108598768	0/0	t0003	4341	43	3	3	27	1	9	copy fasta	EXPH5	chr11	108500435	108598768
EXPH5_chr11_108500435_108598768	0/0	t0004	4336	19	11	1	5	0	2	copy fasta	EXPH5	chr11	108500435	108598768
EXPH5_chr11_108500435_108598768	0/0	t0005	4336	16	1	8	4	1	2	copy fasta	EXPH5	chr11	108500435	108598768
EXPH5_chr11_108500435_108598768	0/0	t0006	4334	10	9	1	0	0	0	copy fasta	EXPH5	chr11	108500435	108598768
EXPH5_chr11_108500435_108598768	0/0	t0007	4341	6	5	1	0	0	0	copy fasta	EXPH5	chr11	108500435	108598768
EXPH5_chr11_108500435_108598768	0/0	t0008	4335	6	6	0	0	0	0	copy fasta	EXPH5	chr11	108500435	108598768
EXPH5_chr11_108500435_108598768	0/0	t0009	4342	4	0	1	2	0	1	copy fasta	EXPH5	chr11	108500435	108598768
EXPH5_chr11_108500435_108598768	0/0	t0010	4342	4	3	1	0	0	0	copy fasta	EXPH5	chr11	108500435	108598768
EXPH5_chr11_108500435_108598768	0/0	t0011	4337	4	1	2	0	1	0	copy fasta	EXPH5	chr11	108500435	108598768
EXPH5_chr11_108500435_108598768	0/0	t0012	4337	3	3	0	0	0	0	copy fasta	EXPH5	chr11	108500435	108598768
EXPH5_chr11_108500435_108598768	0/0	t0013	4339	3	3	0	0	0	0	copy fasta	EXPH5	chr11	108500435	108598768
EXPH5_chr11_108500435_108598768	0/0	t0014	4340	3	3	0	0	0	0	copy fasta	EXPH5	chr11	108500435	108598768
EXPH5_chr11_108500435_108598768	0/0	t0015	4338	3	0	1	2	0	0	copy fasta	EXPH5	chr11	108500435	108598768
EXPH5_chr11_108500435_108598768	0/0	t0016	4339	3	0	1	2	0	0	copy fasta	EXPH5	chr11	108500435	108598768
EXPH5_chr11_108500435_108598768	0/0	t0017	4334	3	2	0	1	0	0	copy fasta	EXPH5	chr11	108500435	108598768
EXPH5_chr11_108500435_108598768	0/0	t0018	4335	3	0	3	0	0	0	copy fasta	EXPH5	chr11	108500435	108598768
EXPH5_chr11_108500435_108598768	0/0	t0019	4336	2	2	0	0	0	0	copy fasta	EXPH5	chr11	108500435	108598768
EXPH5_chr11_108500435_108598768	0/0	t0020	4340	2	0	1	1	0	0	copy fasta	EXPH5	chr11	108500435	108598768
EXPH5_chr11_108500435_108598768	0/0	t0021	4335	2	0	0	1	0	1	copy fasta	EXPH5	chr11	108500435	108598768
EXPH5_chr11_108500435_108598768	0/0	t0022	4336	2	1	1	0	0	0	copy fasta	EXPH5	chr11	108500435	108598768
EXPH5_chr11_108500435_108598768	0/0	t0023	4338	2	0	2	0	0	0	copy fasta	EXPH5	chr11	108500435	108598768
EXPH5_chr11_108500435_108598768	0/0	t0024	4338	1	1	0	0	0	0	copy fasta	EXPH5	chr11	108500435	108598768
EXPH5_chr11_108500435_108598768	0/0	t0025	4336	1	0	1	0	0	0	copy fasta	EXPH5	chr11	108500435	108598768
EXPH5_chr11_108500435_108598768	0/0	t0026	4337	1	0	0	0	0	1	copy fasta	EXPH5	chr11	108500435	108598768
EXPH5_chr11_108500435_108598768	0/0	t0027	4322	1	1	0	0	0	0	copy fasta	EXPH5	chr11	108500435	108598768
EXPH5_chr11_108500435_108598768	0/0	t0028	4340	1	0	0	1	0	0	copy fasta	EXPH5	chr11	108500435	108598768
EXPH5_chr11_108500435_108598768	0/0	t0029	4341	1	0	0	1	0	0	copy fasta	EXPH5	chr11	108500435	108598768
EXPH5_chr11_108500435_108598768	0/0	t0030	4336	1	0	1	0	0	0	copy fasta	EXPH5	chr11	108500435	108598768
EXPH5_chr11_108500435_108598768	0/0	t0031	4337	1	0	0	1	0	0	copy fasta	EXPH5	chr11	108500435	108598768
EXPH5_chr11_108500435_108598768	0/0	t0032	4340	1	0	0	1	0	0	copy fasta	EXPH5	chr11	108500435	108598768
EXPH5_chr11_108500435_108598768	0/0	t0033	4342	1	0	0	1	0	0	copy fasta	EXPH5	chr11	108500435	108598768
EXPH5_chr11_108500435_108598768	0/0	t0034	4341	1	0	0	0	0	1	copy fasta	EXPH5	chr11	108500435	108598768
EXPH5_chr11_108500435_108598768	0/0	t0035	4337	1	0	1	0	0	0	copy fasta	EXPH5	chr11	108500435	108598768
EXPH5_chr11_108500435_108598768	0/0	t0036	4338	1	1	0	0	0	0	copy fasta	EXPH5	chr11	108500435	108598768
EXPH5_chr11_108500435_108598768	0/0	t0037	4336	1	1	0	0	0	0	copy fasta	EXPH5	chr11	108500435	108598768
EXPH5_chr11_108500435_108598768	0/0	t0038	4338	1	1	0	0	0	0	copy fasta	EXPH5	chr11	108500435	108598768
EXPH5_chr11_108500435_108598768	0/0	t0039	4338	1	1	0	0	0	0	copy fasta	EXPH5	chr11	108500435	108598768