Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
AIMP1_chr4_106311550_106354456	0/0	t0003	1836	74	4	10	46	1	13	copy fasta	AIMP1	chr4	106311550	106354456
AIMP1_chr4_106311550_106354456	0/0	t0004	1835	10	5	3	0	1	1	copy fasta	AIMP1	chr4	106311550	106354456
AIMP1_chr4_106311550_106354456	0/0	t0005	1834	8	0	8	0	0	0	copy fasta	AIMP1	chr4	106311550	106354456
AIMP1_chr4_106311550_106354456	0/0	t0006	1836	6	6	0	0	0	0	copy fasta	AIMP1	chr4	106311550	106354456
AIMP1_chr4_106311550_106354456	0/0	t0007	1835	5	0	0	5	0	0	copy fasta	AIMP1	chr4	106311550	106354456
AIMP1_chr4_106311550_106354456	0/0	t0008	1836	5	5	0	0	0	0	copy fasta	AIMP1	chr4	106311550	106354456
AIMP1_chr4_106311550_106354456	0/0	t0009	1836	4	0	0	4	0	0	copy fasta	AIMP1	chr4	106311550	106354456
AIMP1_chr4_106311550_106354456	0/0	t0010	1835	3	3	0	0	0	0	copy fasta	AIMP1	chr4	106311550	106354456
AIMP1_chr4_106311550_106354456	0/0	t0011	1835	1	0	0	1	0	0	copy fasta	AIMP1	chr4	106311550	106354456
AIMP1_chr4_106311550_106354456	0/0	t0012	1835	1	0	0	1	0	0	copy fasta	AIMP1	chr4	106311550	106354456
AIMP1_chr4_106311550_106354456	0/0	t0013	1835	1	0	0	1	0	0	copy fasta	AIMP1	chr4	106311550	106354456
AIMP1_chr4_106311550_106354456	0/0	t0014	1834	1	0	0	1	0	0	copy fasta	AIMP1	chr4	106311550	106354456
AIMP1_chr4_106311550_106354456	0/0	t0015	1835	1	1	0	0	0	0	copy fasta	AIMP1	chr4	106311550	106354456
AIMP1_chr4_106311550_106354456	0/0	t0016	1835	1	0	0	1	0	0	copy fasta	AIMP1	chr4	106311550	106354456
AIMP1_chr4_106311550_106354456	0/0	t0017	1835	1	0	0	0	0	1	copy fasta	AIMP1	chr4	106311550	106354456
AIMP2_chr7_6004272_6028834	1/1	t0001	236	348	70	69	163	14	30	copy fasta	AIMP2	chr7	6004272	6028834
AIMP2_chr7_6004272_6028834	0/0	t0002	236	88	26	11	35	3	13	copy fasta	AIMP2	chr7	6004272	6028834
AIMP2_chr7_6004272_6028834	0/0	t0003	236	1	0	0	1	0	0	copy fasta	AIMP2	chr7	6004272	6028834
AIMP2_chr7_6004272_6028834	0/0	t0004	236	1	0	0	0	0	1	copy fasta	AIMP2	chr7	6004272	6028834
AIMP2_chr7_6004272_6028834	0/0	t0005	236	1	0	0	0	0	1	copy fasta	AIMP2	chr7	6004272	6028834
AIMP2_chr7_6004272_6028834	0/0	t0006	236	1	0	0	0	0	1	copy fasta	AIMP2	chr7	6004272	6028834
AIMP2_chr7_6004272_6028834	0/0	t0007	236	1	0	0	1	0	0	copy fasta	AIMP2	chr7	6004272	6028834
AIMP2_chr7_6004272_6028834	0/0	t0008	236	1	0	0	0	1	0	copy fasta	AIMP2	chr7	6004272	6028834
AIPL1_chr17_6418738_6440121	0/0	t0001	1738	102	4	21	57	7	13	copy fasta	AIPL1	chr17	6418738	6440121
AIPL1_chr17_6418738_6440121	1/0	t0002	1740	76	14	12	42	3	4	copy fasta	AIPL1	chr17	6418738	6440121
AIPL1_chr17_6418738_6440121	0/1	t0003	1738	53	1	27	7	6	11	copy fasta	AIPL1	chr17	6418738	6440121
AIPL1_chr17_6418738_6440121	0/0	t0004	1740	16	0	7	7	0	2	copy fasta	AIPL1	chr17	6418738	6440121
AIPL1_chr17_6418738_6440121	0/0	t0005	1738	16	0	1	15	0	0	copy fasta	AIPL1	chr17	6418738	6440121
AIPL1_chr17_6418738_6440121	0/0	t0006	1740	13	10	0	2	0	1	copy fasta	AIPL1	chr17	6418738	6440121
AIPL1_chr17_6418738_6440121	0/0	t0007	1742	10	0	0	9	0	1	copy fasta	AIPL1	chr17	6418738	6440121
AIPL1_chr17_6418738_6440121	0/0	t0008	1741	10	5	0	3	0	2	copy fasta	AIPL1	chr17	6418738	6440121
AIPL1_chr17_6418738_6440121	0/0	t0009	1740	10	0	0	8	0	2	copy fasta	AIPL1	chr17	6418738	6440121
AIPL1_chr17_6418738_6440121	0/0	t0010	1740	10	8	2	0	0	0	copy fasta	AIPL1	chr17	6418738	6440121
AIPL1_chr17_6418738_6440121	0/0	t0011	1743	9	0	1	8	0	0	copy fasta	AIPL1	chr17	6418738	6440121
AIPL1_chr17_6418738_6440121	0/0	t0012	1743	9	6	1	0	0	2	copy fasta	AIPL1	chr17	6418738	6440121
AIPL1_chr17_6418738_6440121	0/0	t0013	1743	9	2	0	6	0	1	copy fasta	AIPL1	chr17	6418738	6440121
AIPL1_chr17_6418738_6440121	0/0	t0014	1739	7	1	2	3	1	0	copy fasta	AIPL1	chr17	6418738	6440121
AIPL1_chr17_6418738_6440121	0/0	t0015	1742	6	6	0	0	0	0	copy fasta	AIPL1	chr17	6418738	6440121
AIPL1_chr17_6418738_6440121	0/0	t0016	1740	6	6	0	0	0	0	copy fasta	AIPL1	chr17	6418738	6440121
AIPL1_chr17_6418738_6440121	0/0	t0017	1742	4	1	0	2	0	1	copy fasta	AIPL1	chr17	6418738	6440121
AIPL1_chr17_6418738_6440121	0/0	t0018	1740	4	4	0	0	0	0	copy fasta	AIPL1	chr17	6418738	6440121
AIPL1_chr17_6418738_6440121	0/0	t0019	1738	4	0	0	4	0	0	copy fasta	AIPL1	chr17	6418738	6440121
AIPL1_chr17_6418738_6440121	0/0	t0020	1738	4	0	0	3	0	1	copy fasta	AIPL1	chr17	6418738	6440121
AIPL1_chr17_6418738_6440121	0/0	t0021	1738	4	0	0	3	0	1	copy fasta	AIPL1	chr17	6418738	6440121
AIPL1_chr17_6418738_6440121	0/0	t0022	1740	3	3	0	0	0	0	copy fasta	AIPL1	chr17	6418738	6440121
AIPL1_chr17_6418738_6440121	0/0	t0023	1740	3	0	0	1	1	1	copy fasta	AIPL1	chr17	6418738	6440121
AIPL1_chr17_6418738_6440121	0/0	t0024	1740	3	3	0	0	0	0	copy fasta	AIPL1	chr17	6418738	6440121
AIPL1_chr17_6418738_6440121	0/0	t0025	1740	3	0	0	2	0	1	copy fasta	AIPL1	chr17	6418738	6440121
AIPL1_chr17_6418738_6440121	0/0	t0026	1743	3	0	0	2	0	1	copy fasta	AIPL1	chr17	6418738	6440121
AIPL1_chr17_6418738_6440121	0/0	t0027	1738	3	0	0	3	0	0	copy fasta	AIPL1	chr17	6418738	6440121