JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
EXPH5_chr11_108500435_108598768	0/0	t0040	4340	1	1	0	0	0	0	copy fasta	EXPH5	chr11	108500435	108598768
EXPH5_chr11_108500435_108598768	0/0	t0041	4340	1	1	0	0	0	0	copy fasta	EXPH5	chr11	108500435	108598768
EXPH5_chr11_108500435_108598768	0/0	t0042	4335	1	0	1	0	0	0	copy fasta	EXPH5	chr11	108500435	108598768
EXPH5_chr11_108500435_108598768	0/0	t0043	4337	1	1	0	0	0	0	copy fasta	EXPH5	chr11	108500435	108598768
EXPH5_chr11_108500435_108598768	0/0	t0044	4338	1	1	0	0	0	0	copy fasta	EXPH5	chr11	108500435	108598768
EXPH5_chr11_108500435_108598768	0/0	t0045	4338	1	0	1	0	0	0	copy fasta	EXPH5	chr11	108500435	108598768
EXPH5_chr11_108500435_108598768	0/0	t0046	4338	1	0	0	0	1	0	copy fasta	EXPH5	chr11	108500435	108598768
EXPH5_chr11_108500435_108598768	0/0	t0047	4335	1	1	0	0	0	0	copy fasta	EXPH5	chr11	108500435	108598768
EXPH5_chr11_108500435_108598768	0/0	t0048	4333	1	0	0	1	0	0	copy fasta	EXPH5	chr11	108500435	108598768
EXPH5_chr11_108500435_108598768	0/0	t0049	4335	1	0	0	0	0	1	copy fasta	EXPH5	chr11	108500435	108598768
EXPH5_chr11_108500435_108598768	0/0	t0050	4335	1	0	0	1	0	0	copy fasta	EXPH5	chr11	108500435	108598768
EXPH5_chr11_108500435_108598768	0/0	t0051	4336	1	1	0	0	0	0	copy fasta	EXPH5	chr11	108500435	108598768
EXPH5_chr11_108500435_108598768	0/0	t0052	4336	1	0	1	0	0	0	copy fasta	EXPH5	chr11	108500435	108598768
EXPH5_chr11_108500435_108598768	0/0	t0053	4335	1	0	1	0	0	0	copy fasta	EXPH5	chr11	108500435	108598768
EXPH5_chr11_108500435_108598768	0/0	t0054	4335	1	1	0	0	0	0	copy fasta	EXPH5	chr11	108500435	108598768
EXT1_chr8_117789490_118116826	0/0	t0001	6004	25	0	5	14	2	4	copy fasta	EXT1	chr8	117789490	118116826
EXT1_chr8_117789490_118116826	0/0	t0002	6004	15	0	5	7	1	2	copy fasta	EXT1	chr8	117789490	118116826
EXT1_chr8_117789490_118116826	0/0	t0003	6004	14	1	0	12	0	1	copy fasta	EXT1	chr8	117789490	118116826
EXT1_chr8_117789490_118116826	0/0	t0004	6004	11	1	0	8	0	2	copy fasta	EXT1	chr8	117789490	118116826
EXT1_chr8_117789490_118116826	0/0	t0005	6004	10	0	0	3	1	6	copy fasta	EXT1	chr8	117789490	118116826
EXT1_chr8_117789490_118116826	0/0	t0006	6004	8	7	1	0	0	0	copy fasta	EXT1	chr8	117789490	118116826
EXT1_chr8_117789490_118116826	0/0	t0007	6001	7	0	1	3	0	3	copy fasta	EXT1	chr8	117789490	118116826
EXT1_chr8_117789490_118116826	0/0	t0008	6003	5	0	0	5	0	0	copy fasta	EXT1	chr8	117789490	118116826
EXT1_chr8_117789490_118116826	0/0	t0009	6004	5	5	0	0	0	0	copy fasta	EXT1	chr8	117789490	118116826
EXT1_chr8_117789490_118116826	0/0	t0010	6000	5	0	1	2	0	2	copy fasta	EXT1	chr8	117789490	118116826
EXT1_chr8_117789490_118116826	0/0	t0011	6004	4	0	0	0	0	4	copy fasta	EXT1	chr8	117789490	118116826
EXT1_chr8_117789490_118116826	0/0	t0012	6004	4	4	0	0	0	0	copy fasta	EXT1	chr8	117789490	118116826
EXT1_chr8_117789490_118116826	0/0	t0013	6005	3	3	0	0	0	0	copy fasta	EXT1	chr8	117789490	118116826
EXT1_chr8_117789490_118116826	0/0	t0014	6004	3	3	0	0	0	0	copy fasta	EXT1	chr8	117789490	118116826
EXT1_chr8_117789490_118116826	0/0	t0015	6005	3	2	1	0	0	0	copy fasta	EXT1	chr8	117789490	118116826
EXT1_chr8_117789490_118116826	0/0	t0016	6005	3	3	0	0	0	0	copy fasta	EXT1	chr8	117789490	118116826
EXT1_chr8_117789490_118116826	0/0	t0017	6004	3	3	0	0	0	0	copy fasta	EXT1	chr8	117789490	118116826
EXT1_chr8_117789490_118116826	0/0	t0018	6005	2	2	0	0	0	0	copy fasta	EXT1	chr8	117789490	118116826
EXT1_chr8_117789490_118116826	0/0	t0019	6003	2	2	0	0	0	0	copy fasta	EXT1	chr8	117789490	118116826
EXT1_chr8_117789490_118116826	0/0	t0020	6003	2	0	1	1	0	0	copy fasta	EXT1	chr8	117789490	118116826
EXT1_chr8_117789490_118116826	0/0	t0021	6003	2	0	1	0	1	0	copy fasta	EXT1	chr8	117789490	118116826
EXT1_chr8_117789490_118116826	0/0	t0022	6004	2	0	2	0	0	0	copy fasta	EXT1	chr8	117789490	118116826
EXT1_chr8_117789490_118116826	0/0	t0023	6004	2	1	1	0	0	0	copy fasta	EXT1	chr8	117789490	118116826
EXT1_chr8_117789490_118116826	0/0	t0024	6004	2	2	0	0	0	0	copy fasta	EXT1	chr8	117789490	118116826
EXT1_chr8_117789490_118116826	0/0	t0025	6004	2	2	0	0	0	0	copy fasta	EXT1	chr8	117789490	118116826
EXT1_chr8_117789490_118116826	0/0	t0026	6003	1	0	0	0	1	0	copy fasta	EXT1	chr8	117789490	118116826
EXT1_chr8_117789490_118116826	0/0	t0027	6004	1	1	0	0	0	0	copy fasta	EXT1	chr8	117789490	118116826
EXT1_chr8_117789490_118116826	0/0	t0028	6003	1	1	0	0	0	0	copy fasta	EXT1	chr8	117789490	118116826
EXT1_chr8_117789490_118116826	0/0	t0029	6003	1	1	0	0	0	0	copy fasta	EXT1	chr8	117789490	118116826
EXT1_chr8_117789490_118116826	0/0	t0030	6003	1	1	0	0	0	0	copy fasta	EXT1	chr8	117789490	118116826
EXT1_chr8_117789490_118116826	0/0	t0031	6004	1	1	0	0	0	0	copy fasta	EXT1	chr8	117789490	118116826
EXT1_chr8_117789490_118116826	0/0	t0032	6003	1	1	0	0	0	0	copy fasta	EXT1	chr8	117789490	118116826
EXT1_chr8_117789490_118116826	0/0	t0033	6004	1	1	0	0	0	0	copy fasta	EXT1	chr8	117789490	118116826
EXT1_chr8_117789490_118116826	0/0	t0034	6004	1	1	0	0	0	0	copy fasta	EXT1	chr8	117789490	118116826
EXT1_chr8_117789490_118116826	0/0	t0035	6005	1	1	0	0	0	0	copy fasta	EXT1	chr8	117789490	118116826