JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
EXT1_chr8_117789490_118116826	0/0	t0036	6003	1	0	0	1	0	0	copy fasta	EXT1	chr8	117789490	118116826
EXT1_chr8_117789490_118116826	0/0	t0037	6003	1	1	0	0	0	0	copy fasta	EXT1	chr8	117789490	118116826
EXT1_chr8_117789490_118116826	0/0	t0038	6003	1	1	0	0	0	0	copy fasta	EXT1	chr8	117789490	118116826
EXT1_chr8_117789490_118116826	0/0	t0039	6003	1	1	0	0	0	0	copy fasta	EXT1	chr8	117789490	118116826
EXT1_chr8_117789490_118116826	0/0	t0040	6004	1	1	0	0	0	0	copy fasta	EXT1	chr8	117789490	118116826
EXT1_chr8_117789490_118116826	0/0	t0041	6004	1	0	0	0	0	1	copy fasta	EXT1	chr8	117789490	118116826
EXT1_chr8_117789490_118116826	0/0	t0042	6004	1	0	0	1	0	0	copy fasta	EXT1	chr8	117789490	118116826
EXT1_chr8_117789490_118116826	0/0	t0043	6006	1	1	0	0	0	0	copy fasta	EXT1	chr8	117789490	118116826
EXT1_chr8_117789490_118116826	0/0	t0044	6003	1	0	0	1	0	0	copy fasta	EXT1	chr8	117789490	118116826
EXT1_chr8_117789490_118116826	0/0	t0045	6004	1	0	0	1	0	0	copy fasta	EXT1	chr8	117789490	118116826
EXT1_chr8_117789490_118116826	0/0	t0046	6004	1	1	0	0	0	0	copy fasta	EXT1	chr8	117789490	118116826
EXT1_chr8_117789490_118116826	0/0	t0047	6004	1	1	0	0	0	0	copy fasta	EXT1	chr8	117789490	118116826
EXT1_chr8_117789490_118116826	0/0	t0048	6003	1	1	0	0	0	0	copy fasta	EXT1	chr8	117789490	118116826
EXT1_chr8_117789490_118116826	0/0	t0049	6004	1	0	0	1	0	0	copy fasta	EXT1	chr8	117789490	118116826
EXT1_chr8_117789490_118116826	0/0	t0050	6004	1	0	0	0	0	1	copy fasta	EXT1	chr8	117789490	118116826
EXT1_chr8_117789490_118116826	0/0	t0051	6004	1	0	0	1	0	0	copy fasta	EXT1	chr8	117789490	118116826
EXT1_chr8_117789490_118116826	0/0	t0052	6004	1	0	0	1	0	0	copy fasta	EXT1	chr8	117789490	118116826
EXT1_chr8_117789490_118116826	0/0	t0053	6004	1	0	0	1	0	0	copy fasta	EXT1	chr8	117789490	118116826
EXT1_chr8_117789490_118116826	0/0	t0054	6004	1	0	0	1	0	0	copy fasta	EXT1	chr8	117789490	118116826
EXT1_chr8_117789490_118116826	0/0	t0055	6001	1	1	0	0	0	0	copy fasta	EXT1	chr8	117789490	118116826
EXT1_chr8_117789490_118116826	0/0	t0056	6004	1	1	0	0	0	0	copy fasta	EXT1	chr8	117789490	118116826
EXT1_chr8_117789490_118116826	0/0	t0057	6002	1	1	0	0	0	0	copy fasta	EXT1	chr8	117789490	118116826
EXT1_chr8_117789490_118116826	0/0	t0058	6003	1	1	0	0	0	0	copy fasta	EXT1	chr8	117789490	118116826
EXT1_chr8_117789490_118116826	0/0	t0059	6003	1	0	0	1	0	0	copy fasta	EXT1	chr8	117789490	118116826
EXT1_chr8_117789490_118116826	0/0	t0060	6005	1	1	0	0	0	0	copy fasta	EXT1	chr8	117789490	118116826
EXT1_chr8_117789490_118116826	0/0	t0061	6003	1	1	0	0	0	0	copy fasta	EXT1	chr8	117789490	118116826
EXT1_chr8_117789490_118116826	0/0	t0062	6004	1	1	0	0	0	0	copy fasta	EXT1	chr8	117789490	118116826
EXT1_chr8_117789490_118116826	0/0	t0063	6004	1	1	0	0	0	0	copy fasta	EXT1	chr8	117789490	118116826
EXT1_chr8_117789490_118116826	0/0	t0064	6004	1	1	0	0	0	0	copy fasta	EXT1	chr8	117789490	118116826
EXT1_chr8_117789490_118116826	0/0	t0065	6003	1	1	0	0	0	0	copy fasta	EXT1	chr8	117789490	118116826
EXT1_chr8_117789490_118116826	0/0	t0066	6003	1	1	0	0	0	0	copy fasta	EXT1	chr8	117789490	118116826
EXT1_chr8_117789490_118116826	0/0	t0067	6004	1	0	0	1	0	0	copy fasta	EXT1	chr8	117789490	118116826
EXT1_chr8_117789490_118116826	0/0	t0068	6003	1	1	0	0	0	0	copy fasta	EXT1	chr8	117789490	118116826
EXT1_chr8_117789490_118116826	0/0	t0069	6006	1	0	1	0	0	0	copy fasta	EXT1	chr8	117789490	118116826
EXT1_chr8_117789490_118116826	0/0	t0070	6003	1	1	0	0	0	0	copy fasta	EXT1	chr8	117789490	118116826
EXT1_chr8_117789490_118116826	0/0	t0071	6004	1	1	0	0	0	0	copy fasta	EXT1	chr8	117789490	118116826
EXT2_chr11_44090678_44256962	0/0	t0001	7880	60	5	10	35	1	9	copy fasta	EXT2	chr11	44090678	44256962
EXT2_chr11_44090678_44256962	0/1	t0002	7881	45	5	9	21	2	7	copy fasta	EXT2	chr11	44090678	44256962
EXT2_chr11_44090678_44256962	0/0	t0003	7880	37	19	4	11	0	3	copy fasta	EXT2	chr11	44090678	44256962
EXT2_chr11_44090678_44256962	0/0	t0004	7877	25	0	0	23	0	2	copy fasta	EXT2	chr11	44090678	44256962
EXT2_chr11_44090678_44256962	0/0	t0005	7882	22	5	5	9	2	1	copy fasta	EXT2	chr11	44090678	44256962
EXT2_chr11_44090678_44256962	0/0	t0006	7881	16	0	0	14	0	2	copy fasta	EXT2	chr11	44090678	44256962
EXT2_chr11_44090678_44256962	1/0	t0007	7881	14	9	2	0	2	0	copy fasta	EXT2	chr11	44090678	44256962
EXT2_chr11_44090678_44256962	0/0	t0008	7877	12	0	0	12	0	0	copy fasta	EXT2	chr11	44090678	44256962
EXT2_chr11_44090678_44256962	0/0	t0009	7880	12	0	0	12	0	0	copy fasta	EXT2	chr11	44090678	44256962
EXT2_chr11_44090678_44256962	0/0	t0010	7880	5	5	0	0	0	0	copy fasta	EXT2	chr11	44090678	44256962
EXT2_chr11_44090678_44256962	0/0	t0011	7880	5	0	3	2	0	0	copy fasta	EXT2	chr11	44090678	44256962
EXT2_chr11_44090678_44256962	0/0	t0012	7882	4	1	2	0	0	1	copy fasta	EXT2	chr11	44090678	44256962
EXT2_chr11_44090678_44256962	0/0	t0013	7881	4	1	2	1	0	0	copy fasta	EXT2	chr11	44090678	44256962
EXT2_chr11_44090678_44256962	0/0	t0014	7882	4	3	1	0	0	0	copy fasta	EXT2	chr11	44090678	44256962