JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
EXT2_chr11_44090678_44256962	0/0	t0015	7877	4	4	0	0	0	0	copy fasta	EXT2	chr11	44090678	44256962
EXT2_chr11_44090678_44256962	0/0	t0016	7882	3	1	0	1	0	1	copy fasta	EXT2	chr11	44090678	44256962
EXT2_chr11_44090678_44256962	0/0	t0017	7878	3	0	0	2	0	1	copy fasta	EXT2	chr11	44090678	44256962
EXT2_chr11_44090678_44256962	0/0	t0018	7880	3	2	1	0	0	0	copy fasta	EXT2	chr11	44090678	44256962
EXT2_chr11_44090678_44256962	0/0	t0019	7881	3	3	0	0	0	0	copy fasta	EXT2	chr11	44090678	44256962
EXT2_chr11_44090678_44256962	0/0	t0020	7879	2	1	1	0	0	0	copy fasta	EXT2	chr11	44090678	44256962
EXT2_chr11_44090678_44256962	0/0	t0021	7882	2	0	2	0	0	0	copy fasta	EXT2	chr11	44090678	44256962
EXT2_chr11_44090678_44256962	0/0	t0022	7881	2	2	0	0	0	0	copy fasta	EXT2	chr11	44090678	44256962
EXT2_chr11_44090678_44256962	0/0	t0023	7880	2	0	0	2	0	0	copy fasta	EXT2	chr11	44090678	44256962
EXT2_chr11_44090678_44256962	0/0	t0024	7881	2	0	0	2	0	0	copy fasta	EXT2	chr11	44090678	44256962
EXT2_chr11_44090678_44256962	0/0	t0025	7882	2	0	1	0	0	1	copy fasta	EXT2	chr11	44090678	44256962
EXT2_chr11_44090678_44256962	0/0	t0026	7882	2	0	1	0	1	0	copy fasta	EXT2	chr11	44090678	44256962
EXT2_chr11_44090678_44256962	0/0	t0027	7879	2	2	0	0	0	0	copy fasta	EXT2	chr11	44090678	44256962
EXT2_chr11_44090678_44256962	0/0	t0028	7880	2	2	0	0	0	0	copy fasta	EXT2	chr11	44090678	44256962
EXT2_chr11_44090678_44256962	0/0	t0029	7882	1	1	0	0	0	0	copy fasta	EXT2	chr11	44090678	44256962
EXT2_chr11_44090678_44256962	0/0	t0030	7882	1	1	0	0	0	0	copy fasta	EXT2	chr11	44090678	44256962
EXT2_chr11_44090678_44256962	0/0	t0031	7877	1	0	0	0	1	0	copy fasta	EXT2	chr11	44090678	44256962
EXT2_chr11_44090678_44256962	0/0	t0032	7877	1	0	0	1	0	0	copy fasta	EXT2	chr11	44090678	44256962
EXT2_chr11_44090678_44256962	0/0	t0033	7877	1	0	0	1	0	0	copy fasta	EXT2	chr11	44090678	44256962
EXT2_chr11_44090678_44256962	0/0	t0034	7878	1	0	0	1	0	0	copy fasta	EXT2	chr11	44090678	44256962
EXT2_chr11_44090678_44256962	0/0	t0035	7877	1	0	0	0	0	1	copy fasta	EXT2	chr11	44090678	44256962
EXT2_chr11_44090678_44256962	0/0	t0036	7881	1	0	0	1	0	0	copy fasta	EXT2	chr11	44090678	44256962
EXT2_chr11_44090678_44256962	0/0	t0037	7880	1	0	1	0	0	0	copy fasta	EXT2	chr11	44090678	44256962
EXT2_chr11_44090678_44256962	0/0	t0038	7881	1	0	0	0	0	1	copy fasta	EXT2	chr11	44090678	44256962
EXT2_chr11_44090678_44256962	0/0	t0039	7882	1	1	0	0	0	0	copy fasta	EXT2	chr11	44090678	44256962
EXT2_chr11_44090678_44256962	0/0	t0040	7882	1	0	0	1	0	0	copy fasta	EXT2	chr11	44090678	44256962
EXT2_chr11_44090678_44256962	0/0	t0041	7881	1	0	0	1	0	0	copy fasta	EXT2	chr11	44090678	44256962
EXT2_chr11_44090678_44256962	0/0	t0042	7880	1	0	0	1	0	0	copy fasta	EXT2	chr11	44090678	44256962
EXT2_chr11_44090678_44256962	0/0	t0043	7880	1	0	0	1	0	0	copy fasta	EXT2	chr11	44090678	44256962
EXT2_chr11_44090678_44256962	0/0	t0044	7881	1	0	1	0	0	0	copy fasta	EXT2	chr11	44090678	44256962
EXT2_chr11_44090678_44256962	0/0	t0045	7881	1	0	0	1	0	0	copy fasta	EXT2	chr11	44090678	44256962
EXT2_chr11_44090678_44256962	0/0	t0046	7867	1	0	0	1	0	0	copy fasta	EXT2	chr11	44090678	44256962
EXT2_chr11_44090678_44256962	0/0	t0047	7880	1	1	0	0	0	0	copy fasta	EXT2	chr11	44090678	44256962
EXT2_chr11_44090678_44256962	0/0	t0048	7877	1	0	0	1	0	0	copy fasta	EXT2	chr11	44090678	44256962
EXT2_chr11_44090678_44256962	0/0	t0049	7877	1	0	0	1	0	0	copy fasta	EXT2	chr11	44090678	44256962
EXT2_chr11_44090678_44256962	0/0	t0050	7880	1	0	0	1	0	0	copy fasta	EXT2	chr11	44090678	44256962
EXT2_chr11_44090678_44256962	0/0	t0051	7880	1	0	0	0	0	1	copy fasta	EXT2	chr11	44090678	44256962
EXT2_chr11_44090678_44256962	0/0	t0052	7880	1	0	0	1	0	0	copy fasta	EXT2	chr11	44090678	44256962
EXT2_chr11_44090678_44256962	0/0	t0053	7881	1	1	0	0	0	0	copy fasta	EXT2	chr11	44090678	44256962
EXT2_chr11_44090678_44256962	0/0	t0054	7881	1	1	0	0	0	0	copy fasta	EXT2	chr11	44090678	44256962
EXT2_chr11_44090678_44256962	0/0	t0055	7877	1	0	0	1	0	0	copy fasta	EXT2	chr11	44090678	44256962
EXT2_chr11_44090678_44256962	0/0	t0056	7882	1	1	0	0	0	0	copy fasta	EXT2	chr11	44090678	44256962
EXT2_chr11_44090678_44256962	0/0	t0057	7882	1	0	0	0	1	0	copy fasta	EXT2	chr11	44090678	44256962
EXT2_chr11_44090678_44256962	0/0	t0058	7881	1	1	0	0	0	0	copy fasta	EXT2	chr11	44090678	44256962
EXT2_chr11_44090678_44256962	0/0	t0059	7881	1	0	0	0	0	1	copy fasta	EXT2	chr11	44090678	44256962
EXT2_chr11_44090678_44256962	0/0	t0060	7882	1	1	0	0	0	0	copy fasta	EXT2	chr11	44090678	44256962
EXT2_chr11_44090678_44256962	0/0	t0061	7878	1	1	0	0	0	0	copy fasta	EXT2	chr11	44090678	44256962
EXT2_chr11_44090678_44256962	0/0	t0062	7881	1	1	0	0	0	0	copy fasta	EXT2	chr11	44090678	44256962
EXT2_chr11_44090678_44256962	0/0	t0063	7880	1	1	0	0	0	0	copy fasta	EXT2	chr11	44090678	44256962
EXTL1_chr1_26016775_26041464	0/1	t0001	1990	245	36	48	128	9	23	copy fasta	EXTL1	chr1	26016775	26041464