JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
EXTL1_chr1_26016775_26041464	1/0	t0002	1990	35	12	4	14	1	3	copy fasta	EXTL1	chr1	26016775	26041464
EXTL1_chr1_26016775_26041464	0/0	t0003	1991	21	0	9	4	1	7	copy fasta	EXTL1	chr1	26016775	26041464
EXTL1_chr1_26016775_26041464	0/0	t0004	1990	15	13	2	0	0	0	copy fasta	EXTL1	chr1	26016775	26041464
EXTL1_chr1_26016775_26041464	0/0	t0005	1989	10	9	1	0	0	0	copy fasta	EXTL1	chr1	26016775	26041464
EXTL1_chr1_26016775_26041464	0/0	t0006	1990	7	7	0	0	0	0	copy fasta	EXTL1	chr1	26016775	26041464
EXTL1_chr1_26016775_26041464	0/0	t0007	1990	6	0	2	0	3	1	copy fasta	EXTL1	chr1	26016775	26041464
EXTL1_chr1_26016775_26041464	0/0	t0008	1991	6	5	1	0	0	0	copy fasta	EXTL1	chr1	26016775	26041464
EXTL1_chr1_26016775_26041464	0/0	t0009	1986	5	5	0	0	0	0	copy fasta	EXTL1	chr1	26016775	26041464
EXTL1_chr1_26016775_26041464	0/0	t0010	1990	3	3	0	0	0	0	copy fasta	EXTL1	chr1	26016775	26041464
EXTL1_chr1_26016775_26041464	0/0	t0011	1990	2	0	2	0	0	0	copy fasta	EXTL1	chr1	26016775	26041464
EXTL1_chr1_26016775_26041464	0/0	t0012	1990	2	2	0	0	0	0	copy fasta	EXTL1	chr1	26016775	26041464
EXTL1_chr1_26016775_26041464	0/0	t0013	1990	1	1	0	0	0	0	copy fasta	EXTL1	chr1	26016775	26041464
EXTL1_chr1_26016775_26041464	0/0	t0014	1990	1	0	0	0	0	1	copy fasta	EXTL1	chr1	26016775	26041464
EXTL1_chr1_26016775_26041464	0/0	t0015	1990	1	0	0	0	0	1	copy fasta	EXTL1	chr1	26016775	26041464
EXTL1_chr1_26016775_26041464	0/0	t0016	1990	1	1	0	0	0	0	copy fasta	EXTL1	chr1	26016775	26041464
EXTL1_chr1_26016775_26041464	0/0	t0017	1990	1	0	0	1	0	0	copy fasta	EXTL1	chr1	26016775	26041464
EXTL1_chr1_26016775_26041464	0/0	t0018	1990	1	0	1	0	0	0	copy fasta	EXTL1	chr1	26016775	26041464
EXTL1_chr1_26016775_26041464	0/0	t0019	1990	1	0	0	0	0	1	copy fasta	EXTL1	chr1	26016775	26041464
EXTL1_chr1_26016775_26041464	0/0	t0020	1990	1	0	0	0	0	1	copy fasta	EXTL1	chr1	26016775	26041464
EXTL1_chr1_26016775_26041464	0/0	t0021	1990	1	1	0	0	0	0	copy fasta	EXTL1	chr1	26016775	26041464
EXTL1_chr1_26016775_26041464	0/0	t0022	1990	1	1	0	0	0	0	copy fasta	EXTL1	chr1	26016775	26041464
EXTL1_chr1_26016775_26041464	0/0	t0023	1990	1	0	0	1	0	0	copy fasta	EXTL1	chr1	26016775	26041464
EXTL1_chr1_26016775_26041464	0/0	t0024	1991	1	1	0	0	0	0	copy fasta	EXTL1	chr1	26016775	26041464
EXTL1_chr1_26016775_26041464	0/0	t0025	1991	1	0	1	0	0	0	copy fasta	EXTL1	chr1	26016775	26041464
EXTL1_chr1_26016775_26041464	0/0	t0026	1990	1	1	0	0	0	0	copy fasta	EXTL1	chr1	26016775	26041464
EXTL1_chr1_26016775_26041464	0/0	t0027	1991	1	0	1	0	0	0	copy fasta	EXTL1	chr1	26016775	26041464
EXTL2_chr1_100867391_100899842	1/0	t0001	1833	206	57	40	83	5	20	copy fasta	EXTL2	chr1	100867391	100899842
EXTL2_chr1_100867391_100899842	0/1	t0002	1833	115	16	32	37	11	18	copy fasta	EXTL2	chr1	100867391	100899842
EXTL2_chr1_100867391_100899842	0/0	t0003	1833	47	1	5	35	0	6	copy fasta	EXTL2	chr1	100867391	100899842
EXTL2_chr1_100867391_100899842	0/0	t0004	1833	9	6	0	0	0	3	copy fasta	EXTL2	chr1	100867391	100899842
EXTL2_chr1_100867391_100899842	0/0	t0005	1833	8	0	0	8	0	0	copy fasta	EXTL2	chr1	100867391	100899842
EXTL2_chr1_100867391_100899842	0/0	t0006	1833	7	6	1	0	0	0	copy fasta	EXTL2	chr1	100867391	100899842
EXTL2_chr1_100867391_100899842	0/0	t0007	1830	4	4	0	0	0	0	copy fasta	EXTL2	chr1	100867391	100899842
EXTL2_chr1_100867391_100899842	0/0	t0008	1833	4	0	0	4	0	0	copy fasta	EXTL2	chr1	100867391	100899842
EXTL2_chr1_100867391_100899842	0/0	t0009	1833	3	0	0	3	0	0	copy fasta	EXTL2	chr1	100867391	100899842
EXTL2_chr1_100867391_100899842	0/0	t0010	1833	2	0	1	0	0	1	copy fasta	EXTL2	chr1	100867391	100899842
EXTL2_chr1_100867391_100899842	0/0	t0011	1830	1	1	0	0	0	0	copy fasta	EXTL2	chr1	100867391	100899842
EXTL2_chr1_100867391_100899842	0/0	t0012	1830	1	1	0	0	0	0	copy fasta	EXTL2	chr1	100867391	100899842
EXTL2_chr1_100867391_100899842	0/0	t0013	1833	1	1	0	0	0	0	copy fasta	EXTL2	chr1	100867391	100899842
EXTL2_chr1_100867391_100899842	0/0	t0014	1833	1	1	0	0	0	0	copy fasta	EXTL2	chr1	100867391	100899842
EXTL2_chr1_100867391_100899842	0/0	t0015	1833	1	0	1	0	0	0	copy fasta	EXTL2	chr1	100867391	100899842
EXTL3_chr8_28696501_28760599	1/0	t0001	5462	71	3	11	48	2	6	copy fasta	EXTL3	chr8	28696501	28760599
EXTL3_chr8_28696501_28760599	0/0	t0002	5463	51	2	3	35	5	6	copy fasta	EXTL3	chr8	28696501	28760599
EXTL3_chr8_28696501_28760599	0/1	t0003	5466	21	6	13	1	0	0	copy fasta	EXTL3	chr8	28696501	28760599
EXTL3_chr8_28696501_28760599	0/0	t0004	5472	19	0	1	15	0	3	copy fasta	EXTL3	chr8	28696501	28760599
EXTL3_chr8_28696501_28760599	0/0	t0005	5470	16	3	8	0	3	2	copy fasta	EXTL3	chr8	28696501	28760599
EXTL3_chr8_28696501_28760599	0/0	t0006	5469	10	0	0	10	0	0	copy fasta	EXTL3	chr8	28696501	28760599
EXTL3_chr8_28696501_28760599	0/0	t0007	5463	8	0	0	7	0	1	copy fasta	EXTL3	chr8	28696501	28760599
EXTL3_chr8_28696501_28760599	0/0	t0008	5470	7	0	5	0	2	0	copy fasta	EXTL3	chr8	28696501	28760599
EXTL3_chr8_28696501_28760599	0/0	t0009	5463	7	1	3	3	0	0	copy fasta	EXTL3	chr8	28696501	28760599