JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
EXTL3_chr8_28696501_28760599	0/0	t0010	5470	6	0	0	6	0	0	copy fasta	EXTL3	chr8	28696501	28760599
EXTL3_chr8_28696501_28760599	0/0	t0011	5470	6	0	0	6	0	0	copy fasta	EXTL3	chr8	28696501	28760599
EXTL3_chr8_28696501_28760599	0/0	t0012	5473	5	5	0	0	0	0	copy fasta	EXTL3	chr8	28696501	28760599
EXTL3_chr8_28696501_28760599	0/0	t0013	5462	5	5	0	0	0	0	copy fasta	EXTL3	chr8	28696501	28760599
EXTL3_chr8_28696501_28760599	0/0	t0014	5472	4	0	0	4	0	0	copy fasta	EXTL3	chr8	28696501	28760599
EXTL3_chr8_28696501_28760599	0/0	t0015	5467	4	0	4	0	0	0	copy fasta	EXTL3	chr8	28696501	28760599
EXTL3_chr8_28696501_28760599	0/0	t0016	5470	4	4	0	0	0	0	copy fasta	EXTL3	chr8	28696501	28760599
EXTL3_chr8_28696501_28760599	0/0	t0017	5470	4	4	0	0	0	0	copy fasta	EXTL3	chr8	28696501	28760599
EXTL3_chr8_28696501_28760599	0/0	t0018	5464	4	0	1	2	1	0	copy fasta	EXTL3	chr8	28696501	28760599
EXTL3_chr8_28696501_28760599	0/0	t0019	5468	4	1	1	1	0	1	copy fasta	EXTL3	chr8	28696501	28760599
EXTL3_chr8_28696501_28760599	0/0	t0020	5465	3	2	1	0	0	0	copy fasta	EXTL3	chr8	28696501	28760599
EXTL3_chr8_28696501_28760599	0/0	t0021	5472	3	3	0	0	0	0	copy fasta	EXTL3	chr8	28696501	28760599
EXTL3_chr8_28696501_28760599	0/0	t0022	5469	3	0	0	3	0	0	copy fasta	EXTL3	chr8	28696501	28760599
EXTL3_chr8_28696501_28760599	0/0	t0023	5472	3	1	1	0	0	1	copy fasta	EXTL3	chr8	28696501	28760599
EXTL3_chr8_28696501_28760599	0/0	t0024	5469	3	1	2	0	0	0	copy fasta	EXTL3	chr8	28696501	28760599
EXTL3_chr8_28696501_28760599	0/0	t0025	5463	3	0	0	3	0	0	copy fasta	EXTL3	chr8	28696501	28760599
EXTL3_chr8_28696501_28760599	0/0	t0026	5462	3	0	3	0	0	0	copy fasta	EXTL3	chr8	28696501	28760599
EXTL3_chr8_28696501_28760599	0/0	t0027	5485	2	2	0	0	0	0	copy fasta	EXTL3	chr8	28696501	28760599
EXTL3_chr8_28696501_28760599	0/0	t0028	5478	2	2	0	0	0	0	copy fasta	EXTL3	chr8	28696501	28760599
EXTL3_chr8_28696501_28760599	0/0	t0029	5475	2	0	0	0	1	1	copy fasta	EXTL3	chr8	28696501	28760599
EXTL3_chr8_28696501_28760599	0/0	t0030	5471	2	2	0	0	0	0	copy fasta	EXTL3	chr8	28696501	28760599
EXTL3_chr8_28696501_28760599	0/0	t0031	5473	2	1	0	0	1	0	copy fasta	EXTL3	chr8	28696501	28760599
EXTL3_chr8_28696501_28760599	0/0	t0032	5465	2	0	0	2	0	0	copy fasta	EXTL3	chr8	28696501	28760599
EXTL3_chr8_28696501_28760599	0/0	t0033	5469	2	0	0	2	0	0	copy fasta	EXTL3	chr8	28696501	28760599
EXTL3_chr8_28696501_28760599	0/0	t0034	5470	2	0	2	0	0	0	copy fasta	EXTL3	chr8	28696501	28760599
EXTL3_chr8_28696501_28760599	0/0	t0035	5468	2	2	0	0	0	0	copy fasta	EXTL3	chr8	28696501	28760599
EXTL3_chr8_28696501_28760599	0/0	t0036	5477	2	1	1	0	0	0	copy fasta	EXTL3	chr8	28696501	28760599
EXTL3_chr8_28696501_28760599	0/0	t0037	5469	2	0	0	2	0	0	copy fasta	EXTL3	chr8	28696501	28760599
EXTL3_chr8_28696501_28760599	0/0	t0038	5468	2	2	0	0	0	0	copy fasta	EXTL3	chr8	28696501	28760599
EXTL3_chr8_28696501_28760599	0/0	t0039	5465	2	0	2	0	0	0	copy fasta	EXTL3	chr8	28696501	28760599
EXTL3_chr8_28696501_28760599	0/0	t0040	5474	2	2	0	0	0	0	copy fasta	EXTL3	chr8	28696501	28760599
EXTL3_chr8_28696501_28760599	0/0	t0041	5463	2	0	0	2	0	0	copy fasta	EXTL3	chr8	28696501	28760599
EXTL3_chr8_28696501_28760599	0/0	t0042	5462	2	0	0	2	0	0	copy fasta	EXTL3	chr8	28696501	28760599
EXTL3_chr8_28696501_28760599	0/0	t0043	5464	2	0	0	2	0	0	copy fasta	EXTL3	chr8	28696501	28760599
EXTL3_chr8_28696501_28760599	0/0	t0044	5466	2	1	0	0	0	1	copy fasta	EXTL3	chr8	28696501	28760599
EXTL3_chr8_28696501_28760599	0/0	t0045	5465	2	0	0	2	0	0	copy fasta	EXTL3	chr8	28696501	28760599
EXTL3_chr8_28696501_28760599	0/0	t0046	5465	2	0	2	0	0	0	copy fasta	EXTL3	chr8	28696501	28760599
EXTL3_chr8_28696501_28760599	0/0	t0047	5463	2	0	0	2	0	0	copy fasta	EXTL3	chr8	28696501	28760599
EXTL3_chr8_28696501_28760599	0/0	t0048	5481	2	2	0	0	0	0	copy fasta	EXTL3	chr8	28696501	28760599
EXTL3_chr8_28696501_28760599	0/0	t0049	5488	1	1	0	0	0	0	copy fasta	EXTL3	chr8	28696501	28760599
EXTL3_chr8_28696501_28760599	0/0	t0050	5485	1	1	0	0	0	0	copy fasta	EXTL3	chr8	28696501	28760599
EXTL3_chr8_28696501_28760599	0/0	t0051	5478	1	1	0	0	0	0	copy fasta	EXTL3	chr8	28696501	28760599
EXTL3_chr8_28696501_28760599	0/0	t0052	5478	1	1	0	0	0	0	copy fasta	EXTL3	chr8	28696501	28760599
EXTL3_chr8_28696501_28760599	0/0	t0053	5485	1	1	0	0	0	0	copy fasta	EXTL3	chr8	28696501	28760599
EXTL3_chr8_28696501_28760599	0/0	t0054	5476	1	1	0	0	0	0	copy fasta	EXTL3	chr8	28696501	28760599
EXTL3_chr8_28696501_28760599	0/0	t0055	5482	1	1	0	0	0	0	copy fasta	EXTL3	chr8	28696501	28760599
EXTL3_chr8_28696501_28760599	0/0	t0056	5473	1	1	0	0	0	0	copy fasta	EXTL3	chr8	28696501	28760599
EXTL3_chr8_28696501_28760599	0/0	t0057	5471	1	1	0	0	0	0	copy fasta	EXTL3	chr8	28696501	28760599
EXTL3_chr8_28696501_28760599	0/0	t0058	5469	1	1	0	0	0	0	copy fasta	EXTL3	chr8	28696501	28760599
EXTL3_chr8_28696501_28760599	0/0	t0059	5465	1	1	0	0	0	0	copy fasta	EXTL3	chr8	28696501	28760599