JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
EXTL3_chr8_28696501_28760599	0/0	t0060	5474	1	1	0	0	0	0	copy fasta	EXTL3	chr8	28696501	28760599
EXTL3_chr8_28696501_28760599	0/0	t0061	5472	1	0	0	1	0	0	copy fasta	EXTL3	chr8	28696501	28760599
EXTL3_chr8_28696501_28760599	0/0	t0062	5462	1	0	0	1	0	0	copy fasta	EXTL3	chr8	28696501	28760599
EXTL3_chr8_28696501_28760599	0/0	t0063	5470	1	1	0	0	0	0	copy fasta	EXTL3	chr8	28696501	28760599
EXTL3_chr8_28696501_28760599	0/0	t0064	5469	1	0	0	1	0	0	copy fasta	EXTL3	chr8	28696501	28760599
EXTL3_chr8_28696501_28760599	0/0	t0065	5469	1	0	0	1	0	0	copy fasta	EXTL3	chr8	28696501	28760599
EXTL3_chr8_28696501_28760599	0/0	t0066	5469	1	0	0	1	0	0	copy fasta	EXTL3	chr8	28696501	28760599
EXTL3_chr8_28696501_28760599	0/0	t0067	5472	1	0	0	0	0	1	copy fasta	EXTL3	chr8	28696501	28760599
EXTL3_chr8_28696501_28760599	0/0	t0068	5473	1	1	0	0	0	0	copy fasta	EXTL3	chr8	28696501	28760599
EXTL3_chr8_28696501_28760599	0/0	t0069	5473	1	1	0	0	0	0	copy fasta	EXTL3	chr8	28696501	28760599
EXTL3_chr8_28696501_28760599	0/0	t0070	5471	1	0	0	0	0	1	copy fasta	EXTL3	chr8	28696501	28760599
EXTL3_chr8_28696501_28760599	0/0	t0071	5474	1	0	0	1	0	0	copy fasta	EXTL3	chr8	28696501	28760599
EXTL3_chr8_28696501_28760599	0/0	t0072	5475	1	0	1	0	0	0	copy fasta	EXTL3	chr8	28696501	28760599
EXTL3_chr8_28696501_28760599	0/0	t0073	5479	1	1	0	0	0	0	copy fasta	EXTL3	chr8	28696501	28760599
EXTL3_chr8_28696501_28760599	0/0	t0074	5462	1	0	0	0	1	0	copy fasta	EXTL3	chr8	28696501	28760599
EXTL3_chr8_28696501_28760599	0/0	t0075	5462	1	0	1	0	0	0	copy fasta	EXTL3	chr8	28696501	28760599
EXTL3_chr8_28696501_28760599	0/0	t0076	5472	1	0	0	1	0	0	copy fasta	EXTL3	chr8	28696501	28760599
EXTL3_chr8_28696501_28760599	0/0	t0077	5472	1	1	0	0	0	0	copy fasta	EXTL3	chr8	28696501	28760599
EXTL3_chr8_28696501_28760599	0/0	t0078	5462	1	0	0	1	0	0	copy fasta	EXTL3	chr8	28696501	28760599
EXTL3_chr8_28696501_28760599	0/0	t0079	5462	1	0	0	1	0	0	copy fasta	EXTL3	chr8	28696501	28760599
EXTL3_chr8_28696501_28760599	0/0	t0080	5462	1	1	0	0	0	0	copy fasta	EXTL3	chr8	28696501	28760599
EXTL3_chr8_28696501_28760599	0/0	t0081	5462	1	0	1	0	0	0	copy fasta	EXTL3	chr8	28696501	28760599
EXTL3_chr8_28696501_28760599	0/0	t0082	5467	1	1	0	0	0	0	copy fasta	EXTL3	chr8	28696501	28760599
EXTL3_chr8_28696501_28760599	0/0	t0083	5466	1	0	0	1	0	0	copy fasta	EXTL3	chr8	28696501	28760599
EXTL3_chr8_28696501_28760599	0/0	t0084	5475	1	1	0	0	0	0	copy fasta	EXTL3	chr8	28696501	28760599
EXTL3_chr8_28696501_28760599	0/0	t0085	5479	1	1	0	0	0	0	copy fasta	EXTL3	chr8	28696501	28760599
EXTL3_chr8_28696501_28760599	0/0	t0086	5463	1	0	0	1	0	0	copy fasta	EXTL3	chr8	28696501	28760599
EXTL3_chr8_28696501_28760599	0/0	t0087	5463	1	0	0	1	0	0	copy fasta	EXTL3	chr8	28696501	28760599
EXTL3_chr8_28696501_28760599	0/0	t0088	5463	1	0	0	1	0	0	copy fasta	EXTL3	chr8	28696501	28760599
EXTL3_chr8_28696501_28760599	0/0	t0089	5463	1	0	0	1	0	0	copy fasta	EXTL3	chr8	28696501	28760599
EXTL3_chr8_28696501_28760599	0/0	t0090	5463	1	0	1	0	0	0	copy fasta	EXTL3	chr8	28696501	28760599
EXTL3_chr8_28696501_28760599	0/0	t0091	5463	1	0	0	1	0	0	copy fasta	EXTL3	chr8	28696501	28760599
EXTL3_chr8_28696501_28760599	0/0	t0092	5463	1	0	0	1	0	0	copy fasta	EXTL3	chr8	28696501	28760599
EXTL3_chr8_28696501_28760599	0/0	t0093	5463	1	0	0	1	0	0	copy fasta	EXTL3	chr8	28696501	28760599
EXTL3_chr8_28696501_28760599	0/0	t0094	5463	1	0	0	1	0	0	copy fasta	EXTL3	chr8	28696501	28760599
EXTL3_chr8_28696501_28760599	0/0	t0095	5463	1	1	0	0	0	0	copy fasta	EXTL3	chr8	28696501	28760599
EXTL3_chr8_28696501_28760599	0/0	t0096	5472	1	0	1	0	0	0	copy fasta	EXTL3	chr8	28696501	28760599
EXTL3_chr8_28696501_28760599	0/0	t0097	5466	1	0	0	1	0	0	copy fasta	EXTL3	chr8	28696501	28760599
EXTL3_chr8_28696501_28760599	0/0	t0098	5477	1	0	1	0	0	0	copy fasta	EXTL3	chr8	28696501	28760599
EXTL3_chr8_28696501_28760599	0/0	t0099	5473	1	1	0	0	0	0	copy fasta	EXTL3	chr8	28696501	28760599
EXTL3_chr8_28696501_28760599	0/0	t0100	5463	1	1	0	0	0	0	copy fasta	EXTL3	chr8	28696501	28760599
EXTL3_chr8_28696501_28760599	0/0	t0101	5470	1	1	0	0	0	0	copy fasta	EXTL3	chr8	28696501	28760599
EXTL3_chr8_28696501_28760599	0/0	t0102	5472	1	0	0	1	0	0	copy fasta	EXTL3	chr8	28696501	28760599
EXTL3_chr8_28696501_28760599	0/0	t0103	5463	1	0	0	1	0	0	copy fasta	EXTL3	chr8	28696501	28760599
EXTL3_chr8_28696501_28760599	0/0	t0104	5462	1	0	0	1	0	0	copy fasta	EXTL3	chr8	28696501	28760599
EXTL3_chr8_28696501_28760599	0/0	t0105	5473	1	1	0	0	0	0	copy fasta	EXTL3	chr8	28696501	28760599
EXTL3_chr8_28696501_28760599	0/0	t0106	5475	1	1	0	0	0	0	copy fasta	EXTL3	chr8	28696501	28760599
EXTL3_chr8_28696501_28760599	0/0	t0107	5483	1	1	0	0	0	0	copy fasta	EXTL3	chr8	28696501	28760599
EYA1_chr8_71192433_71367069	0/0	t0001	2385	123	21	25	51	4	22	copy fasta	EYA1	chr8	71192433	71367069
EYA1_chr8_71192433_71367069	0/1	t0002	2401	41	21	5	10	2	2	copy fasta	EYA1	chr8	71192433	71367069