JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
EYA1_chr8_71192433_71367069	0/0	t0003	2385	14	13	1	0	0	0	copy fasta	EYA1	chr8	71192433	71367069
EYA1_chr8_71192433_71367069	0/0	t0004	2381	10	0	2	8	0	0	copy fasta	EYA1	chr8	71192433	71367069
EYA1_chr8_71192433_71367069	0/0	t0005	2389	7	0	0	7	0	0	copy fasta	EYA1	chr8	71192433	71367069
EYA1_chr8_71192433_71367069	0/0	t0006	2401	5	4	1	0	0	0	copy fasta	EYA1	chr8	71192433	71367069
EYA1_chr8_71192433_71367069	0/0	t0007	2385	4	0	1	0	0	3	copy fasta	EYA1	chr8	71192433	71367069
EYA1_chr8_71192433_71367069	0/0	t0008	2401	3	3	0	0	0	0	copy fasta	EYA1	chr8	71192433	71367069
EYA1_chr8_71192433_71367069	0/0	t0009	2385	2	2	0	0	0	0	copy fasta	EYA1	chr8	71192433	71367069
EYA1_chr8_71192433_71367069	0/0	t0010	2385	2	2	0	0	0	0	copy fasta	EYA1	chr8	71192433	71367069
EYA1_chr8_71192433_71367069	0/0	t0011	2385	2	2	0	0	0	0	copy fasta	EYA1	chr8	71192433	71367069
EYA1_chr8_71192433_71367069	1/0	t0012	2385	2	0	0	0	0	1	copy fasta	EYA1	chr8	71192433	71367069
EYA1_chr8_71192433_71367069	0/0	t0013	2385	2	0	0	0	0	2	copy fasta	EYA1	chr8	71192433	71367069
EYA1_chr8_71192433_71367069	0/0	t0014	2385	1	0	0	0	0	1	copy fasta	EYA1	chr8	71192433	71367069
EYA1_chr8_71192433_71367069	0/0	t0015	2385	1	1	0	0	0	0	copy fasta	EYA1	chr8	71192433	71367069
EYA1_chr8_71192433_71367069	0/0	t0016	2401	1	1	0	0	0	0	copy fasta	EYA1	chr8	71192433	71367069
EYA1_chr8_71192433_71367069	0/0	t0017	2401	1	1	0	0	0	0	copy fasta	EYA1	chr8	71192433	71367069
EYA1_chr8_71192433_71367069	0/0	t0018	2385	1	1	0	0	0	0	copy fasta	EYA1	chr8	71192433	71367069
EYA1_chr8_71192433_71367069	0/0	t0019	2385	1	1	0	0	0	0	copy fasta	EYA1	chr8	71192433	71367069
EYA1_chr8_71192433_71367069	0/0	t0020	2401	1	1	0	0	0	0	copy fasta	EYA1	chr8	71192433	71367069
EYA1_chr8_71192433_71367069	0/0	t0021	2401	1	0	0	0	1	0	copy fasta	EYA1	chr8	71192433	71367069
EYA1_chr8_71192433_71367069	0/0	t0022	2385	1	0	0	0	1	0	copy fasta	EYA1	chr8	71192433	71367069
EYA1_chr8_71192433_71367069	0/0	t0023	2385	1	0	0	0	0	1	copy fasta	EYA1	chr8	71192433	71367069
EYA1_chr8_71192433_71367069	0/0	t0024	2385	1	1	0	0	0	0	copy fasta	EYA1	chr8	71192433	71367069
EYA1_chr8_71192433_71367069	0/0	t0025	2385	1	0	0	1	0	0	copy fasta	EYA1	chr8	71192433	71367069
EYA1_chr8_71192433_71367069	0/0	t0026	2385	1	1	0	0	0	0	copy fasta	EYA1	chr8	71192433	71367069
EYA1_chr8_71192433_71367069	0/0	t0027	2401	1	0	1	0	0	0	copy fasta	EYA1	chr8	71192433	71367069
EYA1_chr8_71192433_71367069	0/0	t0028	2385	1	0	0	1	0	0	copy fasta	EYA1	chr8	71192433	71367069
EYA2_chr20_46889843_47193844	0/0	t0001	867	94	59	5	26	0	4	copy fasta	EYA2	chr20	46889843	47193844
EYA2_chr20_46889843_47193844	1/1	t0002	867	75	9	19	32	1	12	copy fasta	EYA2	chr20	46889843	47193844
EYA2_chr20_46889843_47193844	0/0	t0003	867	64	7	14	34	1	8	copy fasta	EYA2	chr20	46889843	47193844
EYA2_chr20_46889843_47193844	0/0	t0004	867	5	5	0	0	0	0	copy fasta	EYA2	chr20	46889843	47193844
EYA3_chr1_27965344_28093610	0/1	t0001	4278	90	12	22	40	3	12	copy fasta	EYA3	chr1	27965344	28093610
EYA3_chr1_27965344_28093610	0/0	t0002	4278	77	15	17	33	5	7	copy fasta	EYA3	chr1	27965344	28093610
EYA3_chr1_27965344_28093610	0/0	t0003	4266	76	8	18	40	3	7	copy fasta	EYA3	chr1	27965344	28093610
EYA3_chr1_27965344_28093610	0/0	t0004	4281	39	7	3	26	0	3	copy fasta	EYA3	chr1	27965344	28093610
EYA3_chr1_27965344_28093610	1/0	t0005	4278	18	10	2	5	0	0	copy fasta	EYA3	chr1	27965344	28093610
EYA3_chr1_27965344_28093610	0/0	t0006	4282	13	2	1	10	0	0	copy fasta	EYA3	chr1	27965344	28093610
EYA3_chr1_27965344_28093610	0/0	t0007	4279	11	5	1	4	0	1	copy fasta	EYA3	chr1	27965344	28093610
EYA3_chr1_27965344_28093610	0/0	t0008	4277	8	5	2	0	1	0	copy fasta	EYA3	chr1	27965344	28093610
EYA3_chr1_27965344_28093610	0/0	t0009	4279	8	4	0	3	0	1	copy fasta	EYA3	chr1	27965344	28093610
EYA3_chr1_27965344_28093610	0/0	t0010	4272	6	0	0	6	0	0	copy fasta	EYA3	chr1	27965344	28093610
EYA3_chr1_27965344_28093610	0/0	t0011	4277	5	1	0	3	0	1	copy fasta	EYA3	chr1	27965344	28093610
EYA3_chr1_27965344_28093610	0/0	t0012	4280	4	1	0	3	0	0	copy fasta	EYA3	chr1	27965344	28093610
EYA3_chr1_27965344_28093610	0/0	t0013	4266	4	0	0	4	0	0	copy fasta	EYA3	chr1	27965344	28093610
EYA3_chr1_27965344_28093610	0/0	t0014	4278	4	4	0	0	0	0	copy fasta	EYA3	chr1	27965344	28093610
EYA3_chr1_27965344_28093610	0/0	t0015	4280	3	3	0	0	0	0	copy fasta	EYA3	chr1	27965344	28093610
EYA3_chr1_27965344_28093610	0/0	t0016	4245	3	3	0	0	0	0	copy fasta	EYA3	chr1	27965344	28093610
EYA3_chr1_27965344_28093610	0/0	t0017	4281	2	0	0	2	0	0	copy fasta	EYA3	chr1	27965344	28093610
EYA3_chr1_27965344_28093610	0/0	t0018	4267	2	0	1	1	0	0	copy fasta	EYA3	chr1	27965344	28093610
EYA3_chr1_27965344_28093610	0/0	t0019	4281	1	0	0	1	0	0	copy fasta	EYA3	chr1	27965344	28093610
EYA3_chr1_27965344_28093610	0/0	t0020	4280	1	1	0	0	0	0	copy fasta	EYA3	chr1	27965344	28093610