JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
EYA3_chr1_27965344_28093610	0/0	t0021	4278	1	0	0	1	0	0	copy fasta	EYA3	chr1	27965344	28093610
EYA3_chr1_27965344_28093610	0/0	t0022	4265	1	0	0	1	0	0	copy fasta	EYA3	chr1	27965344	28093610
EYA3_chr1_27965344_28093610	0/0	t0023	4266	1	1	0	0	0	0	copy fasta	EYA3	chr1	27965344	28093610
EYA3_chr1_27965344_28093610	0/0	t0024	4288	1	0	1	0	0	0	copy fasta	EYA3	chr1	27965344	28093610
EYA3_chr1_27965344_28093610	0/0	t0025	4266	1	0	0	0	0	1	copy fasta	EYA3	chr1	27965344	28093610
EYA3_chr1_27965344_28093610	0/0	t0026	4278	1	0	0	0	0	1	copy fasta	EYA3	chr1	27965344	28093610
EYA3_chr1_27965344_28093610	0/0	t0027	4266	1	0	0	1	0	0	copy fasta	EYA3	chr1	27965344	28093610
EYA3_chr1_27965344_28093610	0/0	t0028	4278	1	0	0	0	1	0	copy fasta	EYA3	chr1	27965344	28093610
EYA3_chr1_27965344_28093610	0/0	t0029	4278	1	1	0	0	0	0	copy fasta	EYA3	chr1	27965344	28093610
EYA3_chr1_27965344_28093610	0/0	t0030	4278	1	0	0	1	0	0	copy fasta	EYA3	chr1	27965344	28093610
EYA3_chr1_27965344_28093610	0/0	t0031	4278	1	1	0	0	0	0	copy fasta	EYA3	chr1	27965344	28093610
EYA3_chr1_27965344_28093610	0/0	t0032	4278	1	1	0	0	0	0	copy fasta	EYA3	chr1	27965344	28093610
EYA3_chr1_27965344_28093610	0/0	t0033	4262	1	1	0	0	0	0	copy fasta	EYA3	chr1	27965344	28093610
EYA3_chr1_27965344_28093610	0/0	t0034	4276	1	1	0	0	0	0	copy fasta	EYA3	chr1	27965344	28093610
EYA3_chr1_27965344_28093610	0/0	t0035	4264	1	0	0	1	0	0	copy fasta	EYA3	chr1	27965344	28093610
EYA3_chr1_27965344_28093610	0/0	t0036	4245	1	1	0	0	0	0	copy fasta	EYA3	chr1	27965344	28093610
EYA3_chr1_27965344_28093610	0/0	t0037	4278	1	0	0	0	1	0	copy fasta	EYA3	chr1	27965344	28093610
EYA4_chr6_133236357_133537128	0/1	t0001	3781	95	8	14	54	1	17	copy fasta	EYA4	chr6	133236357	133537128
EYA4_chr6_133236357_133537128	0/0	t0002	3782	47	1	12	28	1	5	copy fasta	EYA4	chr6	133236357	133537128
EYA4_chr6_133236357_133537128	0/0	t0003	3782	16	9	3	1	2	1	copy fasta	EYA4	chr6	133236357	133537128
EYA4_chr6_133236357_133537128	0/0	t0004	3782	14	8	2	1	0	3	copy fasta	EYA4	chr6	133236357	133537128
EYA4_chr6_133236357_133537128	0/0	t0005	3783	11	2	3	5	0	1	copy fasta	EYA4	chr6	133236357	133537128
EYA4_chr6_133236357_133537128	0/0	t0006	3781	7	0	0	6	0	1	copy fasta	EYA4	chr6	133236357	133537128
EYA4_chr6_133236357_133537128	0/0	t0007	3782	4	4	0	0	0	0	copy fasta	EYA4	chr6	133236357	133537128
EYA4_chr6_133236357_133537128	0/0	t0008	3782	4	4	0	0	0	0	copy fasta	EYA4	chr6	133236357	133537128
EYA4_chr6_133236357_133537128	0/0	t0009	3782	3	3	0	0	0	0	copy fasta	EYA4	chr6	133236357	133537128
EYA4_chr6_133236357_133537128	0/0	t0010	3782	3	3	0	0	0	0	copy fasta	EYA4	chr6	133236357	133537128
EYA4_chr6_133236357_133537128	0/0	t0011	3782	3	3	0	0	0	0	copy fasta	EYA4	chr6	133236357	133537128
EYA4_chr6_133236357_133537128	0/0	t0012	3784	3	3	0	0	0	0	copy fasta	EYA4	chr6	133236357	133537128
EYA4_chr6_133236357_133537128	0/0	t0013	3783	3	3	0	0	0	0	copy fasta	EYA4	chr6	133236357	133537128
EYA4_chr6_133236357_133537128	0/0	t0014	3781	3	3	0	0	0	0	copy fasta	EYA4	chr6	133236357	133537128
EYA4_chr6_133236357_133537128	0/0	t0015	3782	3	3	0	0	0	0	copy fasta	EYA4	chr6	133236357	133537128
EYA4_chr6_133236357_133537128	0/0	t0016	3782	2	2	0	0	0	0	copy fasta	EYA4	chr6	133236357	133537128
EYA4_chr6_133236357_133537128	0/0	t0017	3781	2	0	1	0	1	0	copy fasta	EYA4	chr6	133236357	133537128
EYA4_chr6_133236357_133537128	0/0	t0018	3781	2	0	2	0	0	0	copy fasta	EYA4	chr6	133236357	133537128
EYA4_chr6_133236357_133537128	0/0	t0019	3781	2	0	0	2	0	0	copy fasta	EYA4	chr6	133236357	133537128
EYA4_chr6_133236357_133537128	0/0	t0020	3784	2	1	1	0	0	0	copy fasta	EYA4	chr6	133236357	133537128
EYA4_chr6_133236357_133537128	0/0	t0021	3782	2	2	0	0	0	0	copy fasta	EYA4	chr6	133236357	133537128
EYA4_chr6_133236357_133537128	0/0	t0022	3782	2	2	0	0	0	0	copy fasta	EYA4	chr6	133236357	133537128
EYA4_chr6_133236357_133537128	0/0	t0023	3781	2	0	2	0	0	0	copy fasta	EYA4	chr6	133236357	133537128
EYA4_chr6_133236357_133537128	0/0	t0024	3783	1	0	0	1	0	0	copy fasta	EYA4	chr6	133236357	133537128
EYA4_chr6_133236357_133537128	0/0	t0025	3782	1	0	0	1	0	0	copy fasta	EYA4	chr6	133236357	133537128
EYA4_chr6_133236357_133537128	0/0	t0026	3781	1	0	0	1	0	0	copy fasta	EYA4	chr6	133236357	133537128
EYA4_chr6_133236357_133537128	0/0	t0027	3784	1	1	0	0	0	0	copy fasta	EYA4	chr6	133236357	133537128
EYA4_chr6_133236357_133537128	0/0	t0028	3784	1	1	0	0	0	0	copy fasta	EYA4	chr6	133236357	133537128
EYA4_chr6_133236357_133537128	0/0	t0029	3784	1	1	0	0	0	0	copy fasta	EYA4	chr6	133236357	133537128
EYA4_chr6_133236357_133537128	0/0	t0030	3782	1	1	0	0	0	0	copy fasta	EYA4	chr6	133236357	133537128
EYA4_chr6_133236357_133537128	0/0	t0031	3782	1	0	0	0	0	1	copy fasta	EYA4	chr6	133236357	133537128
EYA4_chr6_133236357_133537128	0/0	t0032	3782	1	0	0	1	0	0	copy fasta	EYA4	chr6	133236357	133537128
EYA4_chr6_133236357_133537128	0/0	t0033	3782	1	1	0	0	0	0	copy fasta	EYA4	chr6	133236357	133537128