JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
EYA4_chr6_133236357_133537128	0/0	t0034	3782	1	0	1	0	0	0	copy fasta	EYA4	chr6	133236357	133537128
EYA4_chr6_133236357_133537128	0/0	t0035	3782	1	1	0	0	0	0	copy fasta	EYA4	chr6	133236357	133537128
EYA4_chr6_133236357_133537128	1/0	t0036	3782	1	0	0	0	0	0	copy fasta	EYA4	chr6	133236357	133537128
EYA4_chr6_133236357_133537128	0/0	t0037	3781	1	0	0	0	0	1	copy fasta	EYA4	chr6	133236357	133537128
EYA4_chr6_133236357_133537128	0/0	t0038	3781	1	0	0	1	0	0	copy fasta	EYA4	chr6	133236357	133537128
EYA4_chr6_133236357_133537128	0/0	t0039	3781	1	0	1	0	0	0	copy fasta	EYA4	chr6	133236357	133537128
EYA4_chr6_133236357_133537128	0/0	t0040	3781	1	0	0	0	1	0	copy fasta	EYA4	chr6	133236357	133537128
EYA4_chr6_133236357_133537128	0/0	t0041	3781	1	1	0	0	0	0	copy fasta	EYA4	chr6	133236357	133537128
EYA4_chr6_133236357_133537128	0/0	t0042	3782	1	1	0	0	0	0	copy fasta	EYA4	chr6	133236357	133537128
EYA4_chr6_133236357_133537128	0/0	t0043	3782	1	1	0	0	0	0	copy fasta	EYA4	chr6	133236357	133537128
EYA4_chr6_133236357_133537128	0/0	t0044	3782	1	1	0	0	0	0	copy fasta	EYA4	chr6	133236357	133537128
EYA4_chr6_133236357_133537128	0/0	t0045	3782	1	1	0	0	0	0	copy fasta	EYA4	chr6	133236357	133537128
EYA4_chr6_133236357_133537128	0/0	t0046	3781	1	1	0	0	0	0	copy fasta	EYA4	chr6	133236357	133537128
EYA4_chr6_133236357_133537128	0/0	t0047	3783	1	1	0	0	0	0	copy fasta	EYA4	chr6	133236357	133537128
EYA4_chr6_133236357_133537128	0/0	t0048	3783	1	1	0	0	0	0	copy fasta	EYA4	chr6	133236357	133537128
EYA4_chr6_133236357_133537128	0/0	t0049	3783	1	1	0	0	0	0	copy fasta	EYA4	chr6	133236357	133537128
EYA4_chr6_133236357_133537128	0/0	t0050	3782	1	1	0	0	0	0	copy fasta	EYA4	chr6	133236357	133537128
EYA4_chr6_133236357_133537128	0/0	t0051	3782	1	1	0	0	0	0	copy fasta	EYA4	chr6	133236357	133537128
EYA4_chr6_133236357_133537128	0/0	t0052	3783	1	1	0	0	0	0	copy fasta	EYA4	chr6	133236357	133537128
EYS_chr6_63714980_65712226	0/0	t0001	1156	17	15	2	0	0	0	copy fasta	EYS	chr6	63714980	65712226
EYS_chr6_63714980_65712226	0/0	t0002	1156	7	7	0	0	0	0	copy fasta	EYS	chr6	63714980	65712226
EZH1_chr17_42695275_42750040	0/0	t0001	2391	133	21	26	66	1	19	copy fasta	EZH1	chr17	42695275	42750040
EZH1_chr17_42695275_42750040	1/1	t0002	2390	128	11	36	67	1	11	copy fasta	EZH1	chr17	42695275	42750040
EZH1_chr17_42695275_42750040	0/0	t0003	2391	15	5	0	6	0	4	copy fasta	EZH1	chr17	42695275	42750040
EZH1_chr17_42695275_42750040	0/0	t0004	2390	14	14	0	0	0	0	copy fasta	EZH1	chr17	42695275	42750040
EZH1_chr17_42695275_42750040	0/0	t0005	2391	10	9	1	0	0	0	copy fasta	EZH1	chr17	42695275	42750040
EZH1_chr17_42695275_42750040	0/0	t0006	2391	6	6	0	0	0	0	copy fasta	EZH1	chr17	42695275	42750040
EZH1_chr17_42695275_42750040	0/0	t0007	2390	4	4	0	0	0	0	copy fasta	EZH1	chr17	42695275	42750040
EZH1_chr17_42695275_42750040	0/0	t0008	2390	3	3	0	0	0	0	copy fasta	EZH1	chr17	42695275	42750040
EZH1_chr17_42695275_42750040	0/0	t0009	2390	3	3	0	0	0	0	copy fasta	EZH1	chr17	42695275	42750040
EZH1_chr17_42695275_42750040	0/0	t0010	2391	2	0	0	2	0	0	copy fasta	EZH1	chr17	42695275	42750040
EZH1_chr17_42695275_42750040	0/0	t0011	2390	2	2	0	0	0	0	copy fasta	EZH1	chr17	42695275	42750040
EZH1_chr17_42695275_42750040	0/0	t0012	2392	2	2	0	0	0	0	copy fasta	EZH1	chr17	42695275	42750040
EZH1_chr17_42695275_42750040	0/0	t0013	2391	1	0	0	1	0	0	copy fasta	EZH1	chr17	42695275	42750040
EZH1_chr17_42695275_42750040	0/0	t0014	2391	1	0	0	1	0	0	copy fasta	EZH1	chr17	42695275	42750040
EZH1_chr17_42695275_42750040	0/0	t0015	2391	1	0	0	0	0	1	copy fasta	EZH1	chr17	42695275	42750040
EZH1_chr17_42695275_42750040	0/0	t0016	2391	1	1	0	0	0	0	copy fasta	EZH1	chr17	42695275	42750040
EZH1_chr17_42695275_42750040	0/0	t0017	2391	1	1	0	0	0	0	copy fasta	EZH1	chr17	42695275	42750040
EZH1_chr17_42695275_42750040	0/0	t0018	2391	1	0	0	1	0	0	copy fasta	EZH1	chr17	42695275	42750040
EZH1_chr17_42695275_42750040	0/0	t0019	2391	1	0	0	1	0	0	copy fasta	EZH1	chr17	42695275	42750040
EZH1_chr17_42695275_42750040	0/0	t0020	2390	1	0	1	0	0	0	copy fasta	EZH1	chr17	42695275	42750040
EZH1_chr17_42695275_42750040	0/0	t0021	2390	1	0	0	1	0	0	copy fasta	EZH1	chr17	42695275	42750040
EZH1_chr17_42695275_42750040	0/0	t0022	2390	1	1	0	0	0	0	copy fasta	EZH1	chr17	42695275	42750040
EZH1_chr17_42695275_42750040	0/0	t0023	2391	1	0	0	0	0	1	copy fasta	EZH1	chr17	42695275	42750040
EZH1_chr17_42695275_42750040	0/0	t0024	2391	1	1	0	0	0	0	copy fasta	EZH1	chr17	42695275	42750040
EZH2_chr7_148802383_148889291	0/0	t0001	398	276	87	57	110	6	16	copy fasta	EZH2	chr7	148802383	148889291
EZH2_chr7_148802383_148889291	1/1	t0002	399	99	4	12	60	7	14	copy fasta	EZH2	chr7	148802383	148889291
EZH2_chr7_148802383_148889291	0/0	t0003	398	1	0	0	1	0	0	copy fasta	EZH2	chr7	148802383	148889291
EZH2_chr7_148802383_148889291	0/0	t0004	398	1	0	0	1	0	0	copy fasta	EZH2	chr7	148802383	148889291
EZH2_chr7_148802383_148889291	0/0	t0005	398	1	0	1	0	0	0	copy fasta	EZH2	chr7	148802383	148889291