JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
EZH2_chr7_148802383_148889291	0/0	t0006	398	1	1	0	0	0	0	copy fasta	EZH2	chr7	148802383	148889291
EZH2_chr7_148802383_148889291	0/0	t0007	398	1	0	0	0	1	0	copy fasta	EZH2	chr7	148802383	148889291
EZHIP_chrX_51401948_51413843	1/1	t0001	385	293	77	52	127	11	24	copy fasta	EZHIP	chrX	51401948	51413843
EZHIP_chrX_51401948_51413843	0/0	t0002	385	1	0	0	1	0	0	copy fasta	EZHIP	chrX	51401948	51413843
EZHIP_chrX_51401948_51413843	0/0	t0003	385	1	1	0	0	0	0	copy fasta	EZHIP	chrX	51401948	51413843
EZR_chr6_158760748_158824368	1/0	t0001	1292	125	30	18	57	3	16	copy fasta	EZR	chr6	158760748	158824368
EZR_chr6_158760748_158824368	0/0	t0002	1285	99	28	18	25	8	20	copy fasta	EZR	chr6	158760748	158824368
EZR_chr6_158760748_158824368	0/0	t0003	1291	15	10	4	0	1	0	copy fasta	EZR	chr6	158760748	158824368
EZR_chr6_158760748_158824368	0/1	t0004	1286	11	4	4	2	0	0	copy fasta	EZR	chr6	158760748	158824368
EZR_chr6_158760748_158824368	0/0	t0005	1291	11	5	3	0	0	3	copy fasta	EZR	chr6	158760748	158824368
EZR_chr6_158760748_158824368	0/0	t0006	1286	10	0	3	5	0	2	copy fasta	EZR	chr6	158760748	158824368
EZR_chr6_158760748_158824368	0/0	t0007	1292	7	6	1	0	0	0	copy fasta	EZR	chr6	158760748	158824368
EZR_chr6_158760748_158824368	0/0	t0008	1292	5	5	0	0	0	0	copy fasta	EZR	chr6	158760748	158824368
EZR_chr6_158760748_158824368	0/0	t0009	1288	4	0	1	2	0	1	copy fasta	EZR	chr6	158760748	158824368
EZR_chr6_158760748_158824368	0/0	t0010	1292	3	0	2	0	1	0	copy fasta	EZR	chr6	158760748	158824368
EZR_chr6_158760748_158824368	0/0	t0011	1288	3	0	2	0	1	0	copy fasta	EZR	chr6	158760748	158824368
EZR_chr6_158760748_158824368	0/0	t0012	1285	2	0	0	2	0	0	copy fasta	EZR	chr6	158760748	158824368
EZR_chr6_158760748_158824368	0/0	t0013	1287	2	2	0	0	0	0	copy fasta	EZR	chr6	158760748	158824368
EZR_chr6_158760748_158824368	0/0	t0014	1288	2	2	0	0	0	0	copy fasta	EZR	chr6	158760748	158824368
EZR_chr6_158760748_158824368	0/0	t0015	1287	1	1	0	0	0	0	copy fasta	EZR	chr6	158760748	158824368
EZR_chr6_158760748_158824368	0/0	t0016	1285	1	0	0	0	0	1	copy fasta	EZR	chr6	158760748	158824368
EZR_chr6_158760748_158824368	0/0	t0017	1291	1	0	1	0	0	0	copy fasta	EZR	chr6	158760748	158824368
EZR_chr6_158760748_158824368	0/0	t0018	1286	1	0	0	1	0	0	copy fasta	EZR	chr6	158760748	158824368
EZR_chr6_158760748_158824368	0/0	t0019	1285	1	1	0	0	0	0	copy fasta	EZR	chr6	158760748	158824368
EZR_chr6_158760748_158824368	0/0	t0020	1292	1	0	0	1	0	0	copy fasta	EZR	chr6	158760748	158824368
EZR_chr6_158760748_158824368	0/0	t0021	1292	1	1	0	0	0	0	copy fasta	EZR	chr6	158760748	158824368
EZR_chr6_158760748_158824368	0/0	t0022	1288	1	0	0	0	0	1	copy fasta	EZR	chr6	158760748	158824368
EZR_chr6_158760748_158824368	0/0	t0023	1295	1	0	0	1	0	0	copy fasta	EZR	chr6	158760748	158824368
EZR_chr6_158760748_158824368	0/0	t0024	1287	1	1	0	0	0	0	copy fasta	EZR	chr6	158760748	158824368
EZR_chr6_158760748_158824368	0/0	t0025	1292	1	1	0	0	0	0	copy fasta	EZR	chr6	158760748	158824368
EZR_chr6_158760748_158824368	0/0	t0026	1291	1	0	1	0	0	0	copy fasta	EZR	chr6	158760748	158824368
EZR_chr6_158760748_158824368	0/0	t0027	1291	1	1	0	0	0	0	copy fasta	EZR	chr6	158760748	158824368
F10_chr13_113117799_113154529	1/1	t0001	70	408	90	81	184	18	33	copy fasta	F10	chr13	113117799	113154529
F10_chr13_113117799_113154529	0/0	t0002	70	4	0	1	0	0	3	copy fasta	F10	chr13	113117799	113154529
F11R_chr1_160990211_161026152	0/0	t0001	3739	184	33	30	94	5	22	copy fasta	F11R	chr1	160990211	161026152
F11R_chr1_160990211_161026152	0/0	t0002	3734	76	4	17	44	6	5	copy fasta	F11R	chr1	160990211	161026152
F11R_chr1_160990211_161026152	1/1	t0003	3740	74	9	12	33	7	11	copy fasta	F11R	chr1	160990211	161026152
F11R_chr1_160990211_161026152	0/0	t0004	3741	8	1	1	4	0	2	copy fasta	F11R	chr1	160990211	161026152
F11R_chr1_160990211_161026152	0/0	t0005	3734	5	0	4	1	0	0	copy fasta	F11R	chr1	160990211	161026152
F11R_chr1_160990211_161026152	0/0	t0006	3737	4	3	1	0	0	0	copy fasta	F11R	chr1	160990211	161026152
F11R_chr1_160990211_161026152	0/0	t0007	3740	4	4	0	0	0	0	copy fasta	F11R	chr1	160990211	161026152
F11R_chr1_160990211_161026152	0/0	t0008	3742	3	3	0	0	0	0	copy fasta	F11R	chr1	160990211	161026152
F11R_chr1_160990211_161026152	0/0	t0009	3739	2	2	0	0	0	0	copy fasta	F11R	chr1	160990211	161026152
F11R_chr1_160990211_161026152	0/0	t0010	3739	2	0	0	2	0	0	copy fasta	F11R	chr1	160990211	161026152
F11R_chr1_160990211_161026152	0/0	t0011	3741	2	0	0	2	0	0	copy fasta	F11R	chr1	160990211	161026152
F11R_chr1_160990211_161026152	0/0	t0012	3741	2	2	0	0	0	0	copy fasta	F11R	chr1	160990211	161026152
F11R_chr1_160990211_161026152	0/0	t0013	3740	2	0	0	0	0	2	copy fasta	F11R	chr1	160990211	161026152
F11R_chr1_160990211_161026152	0/0	t0014	3734	2	0	0	0	0	2	copy fasta	F11R	chr1	160990211	161026152
F11R_chr1_160990211_161026152	0/0	t0015	3739	1	0	0	0	0	1	copy fasta	F11R	chr1	160990211	161026152
F11R_chr1_160990211_161026152	0/0	t0016	3739	1	0	0	1	0	0	copy fasta	F11R	chr1	160990211	161026152