Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
AIPL1_chr17_6418738_6440121	0/0	t0028	1741	2	0	0	2	0	0	copy fasta	AIPL1	chr17	6418738	6440121
AIPL1_chr17_6418738_6440121	0/0	t0029	1741	2	1	0	1	0	0	copy fasta	AIPL1	chr17	6418738	6440121
AIPL1_chr17_6418738_6440121	0/0	t0030	1740	2	2	0	0	0	0	copy fasta	AIPL1	chr17	6418738	6440121
AIPL1_chr17_6418738_6440121	0/0	t0031	1740	2	2	0	0	0	0	copy fasta	AIPL1	chr17	6418738	6440121
AIPL1_chr17_6418738_6440121	0/0	t0032	1739	2	0	2	0	0	0	copy fasta	AIPL1	chr17	6418738	6440121
AIPL1_chr17_6418738_6440121	0/0	t0033	1739	2	2	0	0	0	0	copy fasta	AIPL1	chr17	6418738	6440121
AIPL1_chr17_6418738_6440121	0/0	t0034	1739	2	0	1	1	0	0	copy fasta	AIPL1	chr17	6418738	6440121
AIPL1_chr17_6418738_6440121	0/0	t0035	1743	2	0	0	1	0	1	copy fasta	AIPL1	chr17	6418738	6440121
AIPL1_chr17_6418738_6440121	0/0	t0036	1743	2	0	0	2	0	0	copy fasta	AIPL1	chr17	6418738	6440121
AIPL1_chr17_6418738_6440121	0/0	t0037	1738	2	2	0	0	0	0	copy fasta	AIPL1	chr17	6418738	6440121
AIPL1_chr17_6418738_6440121	0/0	t0038	1738	2	0	2	0	0	0	copy fasta	AIPL1	chr17	6418738	6440121
AIPL1_chr17_6418738_6440121	0/0	t0039	1742	1	0	0	1	0	0	copy fasta	AIPL1	chr17	6418738	6440121
AIPL1_chr17_6418738_6440121	0/0	t0040	1742	1	1	0	0	0	0	copy fasta	AIPL1	chr17	6418738	6440121
AIPL1_chr17_6418738_6440121	0/0	t0041	1742	1	1	0	0	0	0	copy fasta	AIPL1	chr17	6418738	6440121
AIPL1_chr17_6418738_6440121	0/0	t0042	1741	1	1	0	0	0	0	copy fasta	AIPL1	chr17	6418738	6440121
AIPL1_chr17_6418738_6440121	0/0	t0043	1741	1	0	0	1	0	0	copy fasta	AIPL1	chr17	6418738	6440121
AIPL1_chr17_6418738_6440121	0/0	t0044	1741	1	0	0	1	0	0	copy fasta	AIPL1	chr17	6418738	6440121
AIPL1_chr17_6418738_6440121	0/0	t0045	1740	1	1	0	0	0	0	copy fasta	AIPL1	chr17	6418738	6440121
AIPL1_chr17_6418738_6440121	0/0	t0046	1740	1	0	0	1	0	0	copy fasta	AIPL1	chr17	6418738	6440121
AIPL1_chr17_6418738_6440121	0/0	t0047	1740	1	0	0	1	0	0	copy fasta	AIPL1	chr17	6418738	6440121
AIPL1_chr17_6418738_6440121	0/0	t0048	1740	1	1	0	0	0	0	copy fasta	AIPL1	chr17	6418738	6440121
AIPL1_chr17_6418738_6440121	0/0	t0049	1740	1	0	0	1	0	0	copy fasta	AIPL1	chr17	6418738	6440121
AIPL1_chr17_6418738_6440121	0/0	t0050	1740	1	0	1	0	0	0	copy fasta	AIPL1	chr17	6418738	6440121
AIPL1_chr17_6418738_6440121	0/0	t0051	1740	1	1	0	0	0	0	copy fasta	AIPL1	chr17	6418738	6440121
AIPL1_chr17_6418738_6440121	0/0	t0052	1740	1	0	0	1	0	0	copy fasta	AIPL1	chr17	6418738	6440121
AIPL1_chr17_6418738_6440121	0/0	t0053	1740	1	1	0	0	0	0	copy fasta	AIPL1	chr17	6418738	6440121
AIPL1_chr17_6418738_6440121	0/0	t0054	1740	1	1	0	0	0	0	copy fasta	AIPL1	chr17	6418738	6440121
AIPL1_chr17_6418738_6440121	0/0	t0055	1739	1	0	0	1	0	0	copy fasta	AIPL1	chr17	6418738	6440121
AIPL1_chr17_6418738_6440121	0/0	t0056	1739	1	0	1	0	0	0	copy fasta	AIPL1	chr17	6418738	6440121
AIPL1_chr17_6418738_6440121	0/0	t0057	1743	1	0	0	1	0	0	copy fasta	AIPL1	chr17	6418738	6440121
AIPL1_chr17_6418738_6440121	0/0	t0058	1738	1	0	1	0	0	0	copy fasta	AIPL1	chr17	6418738	6440121
AIPL1_chr17_6418738_6440121	0/0	t0059	1738	1	0	0	1	0	0	copy fasta	AIPL1	chr17	6418738	6440121
AIPL1_chr17_6418738_6440121	0/0	t0060	1738	1	1	0	0	0	0	copy fasta	AIPL1	chr17	6418738	6440121
AIPL1_chr17_6418738_6440121	0/0	t0061	1738	1	0	0	1	0	0	copy fasta	AIPL1	chr17	6418738	6440121
AIPL1_chr17_6418738_6440121	0/0	t0062	1738	1	0	0	1	0	0	copy fasta	AIPL1	chr17	6418738	6440121
AIPL1_chr17_6418738_6440121	0/0	t0063	1738	1	0	1	0	0	0	copy fasta	AIPL1	chr17	6418738	6440121
AIPL1_chr17_6418738_6440121	0/0	t0064	1738	1	1	0	0	0	0	copy fasta	AIPL1	chr17	6418738	6440121
AIPL1_chr17_6418738_6440121	0/0	t0065	1738	1	0	1	0	0	0	copy fasta	AIPL1	chr17	6418738	6440121
AIPL1_chr17_6418738_6440121	0/0	t0066	1738	1	1	0	0	0	0	copy fasta	AIPL1	chr17	6418738	6440121
AIPL1_chr17_6418738_6440121	0/0	t0067	1743	1	0	1	0	0	0	copy fasta	AIPL1	chr17	6418738	6440121
AIPL1_chr17_6418738_6440121	0/0	t0068	1740	1	1	0	0	0	0	copy fasta	AIPL1	chr17	6418738	6440121
AIPL1_chr17_6418738_6440121	0/0	t0069	1740	1	1	0	0	0	0	copy fasta	AIPL1	chr17	6418738	6440121
AIPL1_chr17_6418738_6440121	0/0	t0070	1738	1	0	1	0	0	0	copy fasta	AIPL1	chr17	6418738	6440121
AIP_chr11_67478026_67496103	1/1	t0001	244	328	86	68	130	10	32	copy fasta	AIP	chr11	67478026	67496103
AIP_chr11_67478026_67496103	0/0	t0002	244	12	0	0	12	0	0	copy fasta	AIP	chr11	67478026	67496103
AIP_chr11_67478026_67496103	0/0	t0003	244	2	2	0	0	0	0	copy fasta	AIP	chr11	67478026	67496103
AIRE_chr21_44280876_44303648	1/1	t0001	1053	312	64	58	142	12	34	copy fasta	AIRE	chr21	44280876	44303648
AIRE_chr21_44280876_44303648	0/0	t0002	1053	70	6	15	42	2	5	copy fasta	AIRE	chr21	44280876	44303648
AIRE_chr21_44280876_44303648	0/0	t0003	1053	16	6	6	1	0	3	copy fasta	AIRE	chr21	44280876	44303648
AIRE_chr21_44280876_44303648	0/0	t0004	1053	8	7	1	0	0	0	copy fasta	AIRE	chr21	44280876	44303648