JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
F11R_chr1_160990211_161026152	0/0	t0017	3739	1	0	0	0	0	1	copy fasta	F11R	chr1	160990211	161026152
F11R_chr1_160990211_161026152	0/0	t0018	3739	1	1	0	0	0	0	copy fasta	F11R	chr1	160990211	161026152
F11R_chr1_160990211_161026152	0/0	t0019	3739	1	0	0	1	0	0	copy fasta	F11R	chr1	160990211	161026152
F11R_chr1_160990211_161026152	0/0	t0020	3739	1	1	0	0	0	0	copy fasta	F11R	chr1	160990211	161026152
F11R_chr1_160990211_161026152	0/0	t0021	3739	1	0	0	1	0	0	copy fasta	F11R	chr1	160990211	161026152
F11R_chr1_160990211_161026152	0/0	t0022	3739	1	0	1	0	0	0	copy fasta	F11R	chr1	160990211	161026152
F11R_chr1_160990211_161026152	0/0	t0023	3739	1	0	1	0	0	0	copy fasta	F11R	chr1	160990211	161026152
F11R_chr1_160990211_161026152	0/0	t0024	3741	1	0	1	0	0	0	copy fasta	F11R	chr1	160990211	161026152
F11R_chr1_160990211_161026152	0/0	t0025	3739	1	0	1	0	0	0	copy fasta	F11R	chr1	160990211	161026152
F11R_chr1_160990211_161026152	0/0	t0026	3743	1	1	0	0	0	0	copy fasta	F11R	chr1	160990211	161026152
F11R_chr1_160990211_161026152	0/0	t0027	3740	1	0	0	1	0	0	copy fasta	F11R	chr1	160990211	161026152
F11R_chr1_160990211_161026152	0/0	t0028	3735	1	1	0	0	0	0	copy fasta	F11R	chr1	160990211	161026152
F11R_chr1_160990211_161026152	0/0	t0029	3742	1	0	0	1	0	0	copy fasta	F11R	chr1	160990211	161026152
F11R_chr1_160990211_161026152	0/0	t0030	3740	1	1	0	0	0	0	copy fasta	F11R	chr1	160990211	161026152
F11R_chr1_160990211_161026152	0/0	t0031	3737	1	1	0	0	0	0	copy fasta	F11R	chr1	160990211	161026152
F11R_chr1_160990211_161026152	0/0	t0032	3734	1	1	0	0	0	0	copy fasta	F11R	chr1	160990211	161026152
F11R_chr1_160990211_161026152	0/0	t0033	3735	1	0	0	1	0	0	copy fasta	F11R	chr1	160990211	161026152
F11R_chr1_160990211_161026152	0/0	t0034	3734	1	0	0	1	0	0	copy fasta	F11R	chr1	160990211	161026152
F11R_chr1_160990211_161026152	0/0	t0035	3734	1	0	1	0	0	0	copy fasta	F11R	chr1	160990211	161026152
F11R_chr1_160990211_161026152	0/0	t0036	3740	1	0	0	1	0	0	copy fasta	F11R	chr1	160990211	161026152
F11_chr4_186261189_186294681	1/0	t0001	1175	268	40	47	144	9	27	copy fasta	F11	chr4	186261189	186294681
F11_chr4_186261189_186294681	0/1	t0002	1175	64	24	11	14	4	10	copy fasta	F11	chr4	186261189	186294681
F11_chr4_186261189_186294681	0/0	t0003	1175	51	12	21	12	4	2	copy fasta	F11	chr4	186261189	186294681
F11_chr4_186261189_186294681	0/0	t0004	1175	41	8	6	20	0	7	copy fasta	F11	chr4	186261189	186294681
F11_chr4_186261189_186294681	0/0	t0005	1175	6	0	0	6	0	0	copy fasta	F11	chr4	186261189	186294681
F11_chr4_186261189_186294681	0/0	t0006	1175	5	5	0	0	0	0	copy fasta	F11	chr4	186261189	186294681
F11_chr4_186261189_186294681	0/0	t0007	1175	5	0	0	5	0	0	copy fasta	F11	chr4	186261189	186294681
F11_chr4_186261189_186294681	0/0	t0008	1175	3	2	1	0	0	0	copy fasta	F11	chr4	186261189	186294681
F11_chr4_186261189_186294681	0/0	t0009	1175	3	0	0	3	0	0	copy fasta	F11	chr4	186261189	186294681
F11_chr4_186261189_186294681	0/0	t0010	1175	2	2	0	0	0	0	copy fasta	F11	chr4	186261189	186294681
F11_chr4_186261189_186294681	0/0	t0011	1175	2	2	0	0	0	0	copy fasta	F11	chr4	186261189	186294681
F11_chr4_186261189_186294681	0/0	t0012	1175	1	1	0	0	0	0	copy fasta	F11	chr4	186261189	186294681
F11_chr4_186261189_186294681	0/0	t0013	1175	1	0	0	1	0	0	copy fasta	F11	chr4	186261189	186294681
F11_chr4_186261189_186294681	0/0	t0014	1175	1	0	0	1	0	0	copy fasta	F11	chr4	186261189	186294681
F11_chr4_186261189_186294681	0/0	t0015	1175	1	1	0	0	0	0	copy fasta	F11	chr4	186261189	186294681
F11_chr4_186261189_186294681	0/0	t0016	1175	1	0	0	0	1	0	copy fasta	F11	chr4	186261189	186294681
F11_chr4_186261189_186294681	0/0	t0017	1175	1	1	0	0	0	0	copy fasta	F11	chr4	186261189	186294681
F12_chr5_177397141_177414564	1/1	t0001	189	248	42	28	149	3	24	copy fasta	F12	chr5	177397141	177414564
F12_chr5_177397141_177414564	0/0	t0002	189	205	53	54	59	13	26	copy fasta	F12	chr5	177397141	177414564
F12_chr5_177397141_177414564	0/0	t0003	189	1	1	0	0	0	0	copy fasta	F12	chr5	177397141	177414564
F13A1_chr6_6139084_6325662	1/1	t0001	1630	144	19	40	66	1	16	copy fasta	F13A1	chr6	6139084	6325662
F13A1_chr6_6139084_6325662	0/0	t0002	1630	94	31	15	35	2	11	copy fasta	F13A1	chr6	6139084	6325662
F13A1_chr6_6139084_6325662	0/0	t0003	1630	19	5	10	0	1	3	copy fasta	F13A1	chr6	6139084	6325662
F13A1_chr6_6139084_6325662	0/0	t0004	1630	16	15	1	0	0	0	copy fasta	F13A1	chr6	6139084	6325662
F13A1_chr6_6139084_6325662	0/0	t0005	1630	4	0	3	0	1	0	copy fasta	F13A1	chr6	6139084	6325662
F13A1_chr6_6139084_6325662	0/0	t0006	1630	4	4	0	0	0	0	copy fasta	F13A1	chr6	6139084	6325662
F13A1_chr6_6139084_6325662	0/0	t0007	1630	3	0	1	1	1	0	copy fasta	F13A1	chr6	6139084	6325662
F13A1_chr6_6139084_6325662	0/0	t0008	1630	1	1	0	0	0	0	copy fasta	F13A1	chr6	6139084	6325662
F13A1_chr6_6139084_6325662	0/0	t0009	1630	1	1	0	0	0	0	copy fasta	F13A1	chr6	6139084	6325662
F13A1_chr6_6139084_6325662	0/0	t0010	1630	1	0	0	1	0	0	copy fasta	F13A1	chr6	6139084	6325662