JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
F13A1_chr6_6139084_6325662	0/0	t0011	1630	1	0	0	0	1	0	copy fasta	F13A1	chr6	6139084	6325662
F13A1_chr6_6139084_6325662	0/0	t0012	1630	1	0	0	1	0	0	copy fasta	F13A1	chr6	6139084	6325662
F13A1_chr6_6139084_6325662	0/0	t0013	1630	1	0	0	1	0	0	copy fasta	F13A1	chr6	6139084	6325662
F13A1_chr6_6139084_6325662	0/0	t0014	1630	1	0	0	0	1	0	copy fasta	F13A1	chr6	6139084	6325662
F13A1_chr6_6139084_6325662	0/0	t0015	1630	1	0	0	1	0	0	copy fasta	F13A1	chr6	6139084	6325662
F13B_chr1_197033741_197072260	1/1	t0001	675	264	78	38	115	8	23	copy fasta	F13B	chr1	197033741	197072260
F13B_chr1_197033741_197072260	0/0	t0002	675	65	5	16	27	4	13	copy fasta	F13B	chr1	197033741	197072260
F13B_chr1_197033741_197072260	0/0	t0003	675	6	0	0	6	0	0	copy fasta	F13B	chr1	197033741	197072260
F13B_chr1_197033741_197072260	0/0	t0004	675	4	4	0	0	0	0	copy fasta	F13B	chr1	197033741	197072260
F13B_chr1_197033741_197072260	0/0	t0005	675	1	0	0	1	0	0	copy fasta	F13B	chr1	197033741	197072260
F13B_chr1_197033741_197072260	0/0	t0006	675	1	1	0	0	0	0	copy fasta	F13B	chr1	197033741	197072260
F13B_chr1_197033741_197072260	0/0	t0007	675	1	0	0	1	0	0	copy fasta	F13B	chr1	197033741	197072260
F2RL1_chr5_76814030_76840315	1/0	t0001	1668	151	6	15	111	4	14	copy fasta	F2RL1	chr5	76814030	76840315
F2RL1_chr5_76814030_76840315	0/1	t0002	1672	125	20	34	38	6	26	copy fasta	F2RL1	chr5	76814030	76840315
F2RL1_chr5_76814030_76840315	0/0	t0003	1672	53	23	11	11	3	5	copy fasta	F2RL1	chr5	76814030	76840315
F2RL1_chr5_76814030_76840315	0/0	t0004	1668	35	3	12	12	3	5	copy fasta	F2RL1	chr5	76814030	76840315
F2RL1_chr5_76814030_76840315	0/0	t0005	1668	14	11	3	0	0	0	copy fasta	F2RL1	chr5	76814030	76840315
F2RL1_chr5_76814030_76840315	0/0	t0006	1678	9	9	0	0	0	0	copy fasta	F2RL1	chr5	76814030	76840315
F2RL1_chr5_76814030_76840315	0/0	t0007	1672	5	5	0	0	0	0	copy fasta	F2RL1	chr5	76814030	76840315
F2RL1_chr5_76814030_76840315	0/0	t0008	1672	3	0	1	2	0	0	copy fasta	F2RL1	chr5	76814030	76840315
F2RL1_chr5_76814030_76840315	0/0	t0009	1668	3	3	0	0	0	0	copy fasta	F2RL1	chr5	76814030	76840315
F2RL1_chr5_76814030_76840315	0/0	t0010	1672	3	3	0	0	0	0	copy fasta	F2RL1	chr5	76814030	76840315
F2RL1_chr5_76814030_76840315	0/0	t0011	1676	3	0	3	0	0	0	copy fasta	F2RL1	chr5	76814030	76840315
F2RL1_chr5_76814030_76840315	0/0	t0012	1676	2	2	0	0	0	0	copy fasta	F2RL1	chr5	76814030	76840315
F2RL1_chr5_76814030_76840315	0/0	t0013	1672	2	2	0	0	0	0	copy fasta	F2RL1	chr5	76814030	76840315
F2RL1_chr5_76814030_76840315	0/0	t0014	1668	1	0	0	1	0	0	copy fasta	F2RL1	chr5	76814030	76840315
F2RL1_chr5_76814030_76840315	0/0	t0015	1668	1	0	0	1	0	0	copy fasta	F2RL1	chr5	76814030	76840315
F2RL1_chr5_76814030_76840315	0/0	t0016	1668	1	0	0	1	0	0	copy fasta	F2RL1	chr5	76814030	76840315
F2RL1_chr5_76814030_76840315	0/0	t0017	1668	1	0	0	1	0	0	copy fasta	F2RL1	chr5	76814030	76840315
F2RL1_chr5_76814030_76840315	0/0	t0018	1672	1	1	0	0	0	0	copy fasta	F2RL1	chr5	76814030	76840315
F2RL1_chr5_76814030_76840315	0/0	t0019	1653	1	0	0	1	0	0	copy fasta	F2RL1	chr5	76814030	76840315
F2RL1_chr5_76814030_76840315	0/0	t0020	1672	1	1	0	0	0	0	copy fasta	F2RL1	chr5	76814030	76840315
F2RL1_chr5_76814030_76840315	0/0	t0021	1672	1	1	0	0	0	0	copy fasta	F2RL1	chr5	76814030	76840315
F2RL1_chr5_76814030_76840315	0/0	t0022	1668	1	0	1	0	0	0	copy fasta	F2RL1	chr5	76814030	76840315
F2RL1_chr5_76814030_76840315	0/0	t0023	1668	1	1	0	0	0	0	copy fasta	F2RL1	chr5	76814030	76840315
F2RL1_chr5_76814030_76840315	0/0	t0024	1676	1	1	0	0	0	0	copy fasta	F2RL1	chr5	76814030	76840315
F2RL1_chr5_76814030_76840315	0/0	t0025	1668	1	0	0	1	0	0	copy fasta	F2RL1	chr5	76814030	76840315
F2RL2_chr5_76610482_76628403	1/0	t0001	2274	127	27	15	83	0	1	copy fasta	F2RL2	chr5	76610482	76628403
F2RL2_chr5_76610482_76628403	0/1	t0002	2274	103	14	24	42	10	12	copy fasta	F2RL2	chr5	76610482	76628403
F2RL2_chr5_76610482_76628403	0/0	t0003	2245	90	18	13	33	7	19	copy fasta	F2RL2	chr5	76610482	76628403
F2RL2_chr5_76610482_76628403	0/0	t0004	2274	47	20	18	3	1	5	copy fasta	F2RL2	chr5	76610482	76628403
F2RL2_chr5_76610482_76628403	0/0	t0005	2274	22	0	3	18	0	1	copy fasta	F2RL2	chr5	76610482	76628403
F2RL2_chr5_76610482_76628403	0/0	t0006	2274	22	0	2	19	0	1	copy fasta	F2RL2	chr5	76610482	76628403
F2RL2_chr5_76610482_76628403	0/0	t0007	2274	13	0	0	13	0	0	copy fasta	F2RL2	chr5	76610482	76628403
F2RL2_chr5_76610482_76628403	0/0	t0008	2274	9	3	1	0	0	5	copy fasta	F2RL2	chr5	76610482	76628403
F2RL2_chr5_76610482_76628403	0/0	t0009	2245	6	0	0	6	0	0	copy fasta	F2RL2	chr5	76610482	76628403
F2RL2_chr5_76610482_76628403	0/0	t0010	2274	5	0	0	5	0	0	copy fasta	F2RL2	chr5	76610482	76628403
F2RL2_chr5_76610482_76628403	0/0	t0011	2274	3	3	0	0	0	0	copy fasta	F2RL2	chr5	76610482	76628403
F2RL2_chr5_76610482_76628403	0/0	t0012	2274	3	0	0	3	0	0	copy fasta	F2RL2	chr5	76610482	76628403
F2RL2_chr5_76610482_76628403	0/0	t0013	2273	3	3	0	0	0	0	copy fasta	F2RL2	chr5	76610482	76628403