JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
F2RL2_chr5_76610482_76628403	0/0	t0014	2274	3	2	1	0	0	0	copy fasta	F2RL2	chr5	76610482	76628403
F2RL2_chr5_76610482_76628403	0/0	t0015	2274	2	2	0	0	0	0	copy fasta	F2RL2	chr5	76610482	76628403
F2RL2_chr5_76610482_76628403	0/0	t0016	2245	2	0	0	2	0	0	copy fasta	F2RL2	chr5	76610482	76628403
F2RL2_chr5_76610482_76628403	0/0	t0017	2274	1	0	1	0	0	0	copy fasta	F2RL2	chr5	76610482	76628403
F2RL2_chr5_76610482_76628403	0/0	t0018	2274	1	0	0	0	0	1	copy fasta	F2RL2	chr5	76610482	76628403
F2RL2_chr5_76610482_76628403	0/0	t0019	2274	1	0	0	1	0	0	copy fasta	F2RL2	chr5	76610482	76628403
F2RL2_chr5_76610482_76628403	0/0	t0020	2274	1	1	0	0	0	0	copy fasta	F2RL2	chr5	76610482	76628403
F2RL2_chr5_76610482_76628403	0/0	t0021	2274	1	0	0	1	0	0	copy fasta	F2RL2	chr5	76610482	76628403
F2RL2_chr5_76610482_76628403	0/0	t0022	2274	1	0	0	1	0	0	copy fasta	F2RL2	chr5	76610482	76628403
F2RL2_chr5_76610482_76628403	0/0	t0023	2274	1	1	0	0	0	0	copy fasta	F2RL2	chr5	76610482	76628403
F2RL2_chr5_76610482_76628403	0/0	t0024	2245	1	0	0	0	0	1	copy fasta	F2RL2	chr5	76610482	76628403
F2RL2_chr5_76610482_76628403	0/0	t0025	2274	1	1	0	0	0	0	copy fasta	F2RL2	chr5	76610482	76628403
F2RL2_chr5_76610482_76628403	0/0	t0026	2274	1	0	1	0	0	0	copy fasta	F2RL2	chr5	76610482	76628403
F2RL2_chr5_76610482_76628403	0/0	t0027	2245	1	0	1	0	0	0	copy fasta	F2RL2	chr5	76610482	76628403
F2RL2_chr5_76610482_76628403	0/0	t0028	2274	1	1	0	0	0	0	copy fasta	F2RL2	chr5	76610482	76628403
F2RL2_chr5_76610482_76628403	0/0	t0029	2274	1	1	0	0	0	0	copy fasta	F2RL2	chr5	76610482	76628403
F2RL2_chr5_76610482_76628403	0/0	t0030	2274	1	1	0	0	0	0	copy fasta	F2RL2	chr5	76610482	76628403
F2RL3_chr19_16883999_16897606	1/1	t0001	2177	183	11	25	117	11	17	copy fasta	F2RL3	chr19	16883999	16897606
F2RL3_chr19_16883999_16897606	0/0	t0002	2177	85	26	15	33	0	11	copy fasta	F2RL3	chr19	16883999	16897606
F2RL3_chr19_16883999_16897606	0/0	t0003	2177	51	2	28	8	5	8	copy fasta	F2RL3	chr19	16883999	16897606
F2RL3_chr19_16883999_16897606	0/0	t0004	2177	30	17	1	12	0	0	copy fasta	F2RL3	chr19	16883999	16897606
F2RL3_chr19_16883999_16897606	0/0	t0005	2177	19	18	1	0	0	0	copy fasta	F2RL3	chr19	16883999	16897606
F2RL3_chr19_16883999_16897606	0/0	t0006	2177	8	6	2	0	0	0	copy fasta	F2RL3	chr19	16883999	16897606
F2RL3_chr19_16883999_16897606	0/0	t0007	2177	4	4	0	0	0	0	copy fasta	F2RL3	chr19	16883999	16897606
F2RL3_chr19_16883999_16897606	0/0	t0008	2177	3	3	0	0	0	0	copy fasta	F2RL3	chr19	16883999	16897606
F2RL3_chr19_16883999_16897606	0/0	t0009	2177	3	0	0	3	0	0	copy fasta	F2RL3	chr19	16883999	16897606
F2RL3_chr19_16883999_16897606	0/0	t0010	2177	2	2	0	0	0	0	copy fasta	F2RL3	chr19	16883999	16897606
F2RL3_chr19_16883999_16897606	0/0	t0011	2177	2	0	0	0	0	2	copy fasta	F2RL3	chr19	16883999	16897606
F2RL3_chr19_16883999_16897606	0/0	t0012	2177	2	0	2	0	0	0	copy fasta	F2RL3	chr19	16883999	16897606
F2RL3_chr19_16883999_16897606	0/0	t0013	2177	1	1	0	0	0	0	copy fasta	F2RL3	chr19	16883999	16897606
F2RL3_chr19_16883999_16897606	0/0	t0014	2177	1	0	1	0	0	0	copy fasta	F2RL3	chr19	16883999	16897606
F2RL3_chr19_16883999_16897606	0/0	t0015	2177	1	1	0	0	0	0	copy fasta	F2RL3	chr19	16883999	16897606
F2RL3_chr19_16883999_16897606	0/0	t0016	2177	1	1	0	0	0	0	copy fasta	F2RL3	chr19	16883999	16897606
F2RL3_chr19_16883999_16897606	0/0	t0017	2177	1	0	0	1	0	0	copy fasta	F2RL3	chr19	16883999	16897606
F2RL3_chr19_16883999_16897606	0/0	t0018	2177	1	0	1	0	0	0	copy fasta	F2RL3	chr19	16883999	16897606
F2RL3_chr19_16883999_16897606	0/0	t0019	2177	1	1	0	0	0	0	copy fasta	F2RL3	chr19	16883999	16897606
F2RL3_chr19_16883999_16897606	0/0	t0020	2177	1	1	0	0	0	0	copy fasta	F2RL3	chr19	16883999	16897606
F2R_chr5_76711126_76740770	1/1	t0001	2450	310	49	58	151	12	38	copy fasta	F2R	chr5	76711126	76740770
F2R_chr5_76711126_76740770	0/0	t0002	2450	43	5	13	16	2	7	copy fasta	F2R	chr5	76711126	76740770
F2R_chr5_76711126_76740770	0/0	t0003	2450	14	4	5	5	0	0	copy fasta	F2R	chr5	76711126	76740770
F2R_chr5_76711126_76740770	0/0	t0004	2450	11	10	1	0	0	0	copy fasta	F2R	chr5	76711126	76740770
F2R_chr5_76711126_76740770	0/0	t0005	2450	7	2	1	0	2	2	copy fasta	F2R	chr5	76711126	76740770
F2R_chr5_76711126_76740770	0/0	t0006	2450	5	5	0	0	0	0	copy fasta	F2R	chr5	76711126	76740770
F2R_chr5_76711126_76740770	0/0	t0007	2450	4	4	0	0	0	0	copy fasta	F2R	chr5	76711126	76740770
F2R_chr5_76711126_76740770	0/0	t0008	2450	3	3	0	0	0	0	copy fasta	F2R	chr5	76711126	76740770
F2R_chr5_76711126_76740770	0/0	t0009	2450	3	3	0	0	0	0	copy fasta	F2R	chr5	76711126	76740770
F2R_chr5_76711126_76740770	0/0	t0010	2450	3	0	0	3	0	0	copy fasta	F2R	chr5	76711126	76740770
F2R_chr5_76711126_76740770	0/0	t0011	2450	2	0	0	2	0	0	copy fasta	F2R	chr5	76711126	76740770
F2R_chr5_76711126_76740770	0/0	t0012	2450	2	2	0	0	0	0	copy fasta	F2R	chr5	76711126	76740770
F2R_chr5_76711126_76740770	0/0	t0013	2450	2	0	2	0	0	0	copy fasta	F2R	chr5	76711126	76740770